Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3789 and GFF3790 are separated by 1 nucleotides GFF3790 and GFF3791 are separated by 69 nucleotides GFF3791 and GFF3792 are separated by 57 nucleotides GFF3792 and GFF3793 are separated by 138 nucleotides
GFF3789 - hypothetical protein, at 286,643 to 287,017
GFF3789
GFF3790 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 287,019 to 287,885
GFF3790
GFF3791 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 287,955 to 289,289
GFF3791
GFF3792 - no description, at 289,347 to 289,751
GFF3792
GFF3793 - no description, at 289,890 to 290,471
GFF3793
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 286.982 kb on + strand at 286.983 kb on - strand at 287.006 kb on + strand at 287.020 kb on + strand at 287.021 kb on - strand at 287.021 kb on - strand at 287.021 kb on - strand at 287.142 kb on - strand, within GFF3790 at 287.209 kb on + strand, within GFF3790 at 287.209 kb on + strand, within GFF3790 at 287.210 kb on - strand, within GFF3790 at 287.257 kb on + strand, within GFF3790 at 287.359 kb on + strand, within GFF3790 at 287.360 kb on - strand, within GFF3790 at 287.360 kb on - strand, within GFF3790 at 287.474 kb on - strand, within GFF3790 at 287.474 kb on - strand, within GFF3790 at 287.492 kb on - strand, within GFF3790 at 287.492 kb on - strand, within GFF3790 at 287.492 kb on - strand, within GFF3790 at 287.734 kb on - strand, within GFF3790 at 287.756 kb on - strand, within GFF3790 at 287.854 kb on + strand at 287.854 kb on + strand at 287.873 kb on + strand at 287.874 kb on - strand at 288.328 kb on - strand, within GFF3791 at 288.328 kb on - strand, within GFF3791 at 288.328 kb on - strand, within GFF3791 at 288.385 kb on - strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.510 kb on + strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.511 kb on - strand, within GFF3791 at 288.642 kb on + strand, within GFF3791 at 288.643 kb on - strand, within GFF3791 at 288.643 kb on - strand, within GFF3791 at 288.661 kb on - strand, within GFF3791 at 288.765 kb on + strand, within GFF3791 at 288.765 kb on + strand, within GFF3791 at 288.766 kb on - strand, within GFF3791 at 288.766 kb on - strand, within GFF3791 at 288.768 kb on + strand, within GFF3791 at 288.768 kb on + strand, within GFF3791 at 288.858 kb on + strand, within GFF3791 at 288.859 kb on - strand, within GFF3791 at 288.859 kb on - strand, within GFF3791 at 288.915 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 288.921 kb on + strand, within GFF3791 at 289.140 kb on + strand, within GFF3791 at 289.218 kb on + strand at 289.218 kb on + strand at 289.218 kb on + strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.219 kb on - strand at 289.384 kb on + strand at 289.385 kb on - strand at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.558 kb on + strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.559 kb on - strand, within GFF3792 at 289.625 kb on - strand, within GFF3792 at 289.625 kb on - strand, within GFF3792 at 289.625 kb on - strand, within GFF3792 at 289.810 kb on + strand at 290.112 kb on + strand, within GFF3793 at 290.115 kb on + strand, within GFF3793 at 290.115 kb on + strand, within GFF3793 at 290.116 kb on - strand, within GFF3793 at 290.116 kb on - strand, within GFF3793 at 290.116 kb on - strand, within GFF3793 at 290.154 kb on + strand, within GFF3793 at 290.154 kb on + strand, within GFF3793 at 290.154 kb on + strand, within GFF3793 at 290.155 kb on - strand, within GFF3793
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 286,982 + +0.2 286,983 - -0.1 287,006 + +0.1 287,020 + -1.6 287,021 - +0.3 287,021 - -1.4 287,021 - -0.3 287,142 - GFF3790 0.14 +1.3 287,209 + GFF3790 0.22 +1.3 287,209 + GFF3790 0.22 +0.3 287,210 - GFF3790 0.22 +3.3 287,257 + GFF3790 0.27 +0.7 287,359 + GFF3790 0.39 +2.3 287,360 - GFF3790 0.39 -0.3 287,360 - GFF3790 0.39 +1.3 287,474 - GFF3790 0.52 +2.3 287,474 - GFF3790 0.52 +2.3 287,492 - GFF3790 0.55 +2.3 287,492 - GFF3790 0.55 -0.9 287,492 - GFF3790 0.55 +2.3 287,734 - GFF3790 0.82 +2.1 287,756 - GFF3790 0.85 +1.3 287,854 + +1.3 287,854 + -0.1 287,873 + +2.3 287,874 - +0.7 288,328 - GFF3791 0.28 +0.8 288,328 - GFF3791 0.28 +0.7 288,328 - GFF3791 0.28 +0.8 288,385 - GFF3791 0.32 -1.0 288,510 + GFF3791 0.42 -1.2 288,510 + GFF3791 0.42 +0.4 288,510 + GFF3791 0.42 +0.3 288,510 + GFF3791 0.42 +0.9 288,510 + GFF3791 0.42 +0.2 288,510 + GFF3791 0.42 -0.6 288,510 + GFF3791 0.42 -0.1 288,510 + GFF3791 0.42 -2.1 288,510 + GFF3791 0.42 +0.8 288,510 + GFF3791 0.42 -1.4 288,510 + GFF3791 0.42 -0.4 288,510 + GFF3791 0.42 -1.1 288,510 + GFF3791 0.42 +0.3 288,511 - GFF3791 0.42 -0.7 288,511 - GFF3791 0.42 -2.2 288,511 - GFF3791 0.42 +1.3 288,511 - GFF3791 0.42 -0.2 288,511 - GFF3791 0.42 +0.6 288,511 - GFF3791 0.42 +1.0 288,511 - GFF3791 0.42 -2.0 288,511 - GFF3791 0.42 -1.7 288,511 - GFF3791 0.42 -1.5 288,642 + GFF3791 0.51 -0.3 288,643 - GFF3791 0.52 +0.2 288,643 - GFF3791 0.52 +1.0 288,661 - GFF3791 0.53 +0.6 288,765 + GFF3791 0.61 -0.6 288,765 + GFF3791 0.61 +2.0 288,766 - GFF3791 0.61 +0.7 288,766 - GFF3791 0.61 -2.6 288,768 + GFF3791 0.61 -1.3 288,768 + GFF3791 0.61 -0.9 288,858 + GFF3791 0.68 +0.4 288,859 - GFF3791 0.68 -1.2 288,859 - GFF3791 0.68 +0.1 288,915 + GFF3791 0.72 -1.5 288,921 + GFF3791 0.72 +1.3 288,921 + GFF3791 0.72 +0.3 288,921 + GFF3791 0.72 +2.6 288,921 + GFF3791 0.72 -0.6 289,140 + GFF3791 0.89 -0.7 289,218 + -2.6 289,218 + +0.5 289,218 + -1.3 289,219 - -0.6 289,219 - +0.3 289,219 - +3.8 289,219 - +0.6 289,219 - +0.3 289,384 + +1.7 289,385 - -1.1 289,558 + GFF3792 0.52 +0.7 289,558 + GFF3792 0.52 -1.6 289,558 + GFF3792 0.52 +1.6 289,558 + GFF3792 0.52 +1.7 289,558 + GFF3792 0.52 +0.5 289,558 + GFF3792 0.52 -0.3 289,558 + GFF3792 0.52 -0.6 289,558 + GFF3792 0.52 +2.1 289,558 + GFF3792 0.52 +1.8 289,559 - GFF3792 0.52 +0.9 289,559 - GFF3792 0.52 +0.3 289,559 - GFF3792 0.52 -2.3 289,559 - GFF3792 0.52 -1.7 289,559 - GFF3792 0.52 -2.4 289,625 - GFF3792 0.69 -1.5 289,625 - GFF3792 0.69 -1.4 289,625 - GFF3792 0.69 -0.0 289,810 + -3.3 290,112 + GFF3793 0.38 +0.4 290,115 + GFF3793 0.39 -1.2 290,115 + GFF3793 0.39 -0.2 290,116 - GFF3793 0.39 -3.1 290,116 - GFF3793 0.39 -1.1 290,116 - GFF3793 0.39 -0.5 290,154 + GFF3793 0.45 -0.7 290,154 + GFF3793 0.45 -0.6 290,154 + GFF3793 0.45 -2.8 290,155 - GFF3793 0.46 -0.7
Or see this region's nucleotide sequence