Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3736 and GFF3737 are separated by 85 nucleotides GFF3737 and GFF3738 overlap by 4 nucleotides GFF3738 and GFF3739 are separated by 29 nucleotides
GFF3736 - UPF0102 protein YraN, at 233,123 to 233,491
GFF3736
GFF3737 - DnaA initiator-associating protein DiaA, at 233,577 to 234,221
GFF3737
GFF3738 - Uncharacterized protein YraP, at 234,218 to 235,030
GFF3738
GFF3739 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 235,060 to 235,968
GFF3739
Position (kb) 234
235
236 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 233.223 kb on - strand, within GFF3736 at 233.393 kb on + strand, within GFF3736 at 233.393 kb on + strand, within GFF3736 at 233.394 kb on - strand, within GFF3736 at 233.564 kb on - strand at 233.564 kb on - strand at 233.564 kb on - strand at 233.628 kb on + strand at 233.629 kb on - strand at 233.629 kb on - strand at 233.629 kb on - strand at 233.629 kb on - strand at 233.629 kb on - strand at 234.194 kb on - strand at 234.194 kb on - strand at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.455 kb on + strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.456 kb on - strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.473 kb on + strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.474 kb on - strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.629 kb on + strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.630 kb on - strand, within GFF3738 at 234.719 kb on + strand, within GFF3738 at 234.720 kb on - strand, within GFF3738 at 234.720 kb on - strand, within GFF3738 at 235.061 kb on + strand at 235.127 kb on + strand at 235.128 kb on - strand at 235.841 kb on + strand, within GFF3739 at 235.841 kb on + strand, within GFF3739 at 235.842 kb on - strand, within GFF3739 at 235.842 kb on - strand, within GFF3739 at 235.842 kb on - strand, within GFF3739 at 235.842 kb on - strand, within GFF3739 at 235.944 kb on - strand at 235.981 kb on + strand at 235.982 kb on - strand at 235.982 kb on - strand at 236.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 233,223 - GFF3736 0.27 +2.5 233,393 + GFF3736 0.73 -1.4 233,393 + GFF3736 0.73 +1.5 233,394 - GFF3736 0.73 +0.4 233,564 - -0.3 233,564 - +1.5 233,564 - +1.2 233,628 + +0.7 233,629 - -3.6 233,629 - -2.3 233,629 - -2.9 233,629 - -1.7 233,629 - -3.4 234,194 - +0.1 234,194 - -1.7 234,455 + GFF3738 0.29 -0.3 234,455 + GFF3738 0.29 -1.1 234,455 + GFF3738 0.29 -0.3 234,455 + GFF3738 0.29 -0.5 234,455 + GFF3738 0.29 -1.3 234,455 + GFF3738 0.29 +0.1 234,455 + GFF3738 0.29 -2.7 234,455 + GFF3738 0.29 +2.8 234,455 + GFF3738 0.29 -0.4 234,455 + GFF3738 0.29 -0.5 234,455 + GFF3738 0.29 -0.7 234,455 + GFF3738 0.29 -3.5 234,456 - GFF3738 0.29 +1.5 234,456 - GFF3738 0.29 -1.3 234,456 - GFF3738 0.29 +0.3 234,456 - GFF3738 0.29 -4.5 234,456 - GFF3738 0.29 -2.8 234,456 - GFF3738 0.29 -2.3 234,456 - GFF3738 0.29 +1.8 234,456 - GFF3738 0.29 -1.1 234,456 - GFF3738 0.29 -1.5 234,456 - GFF3738 0.29 -3.2 234,456 - GFF3738 0.29 -0.3 234,456 - GFF3738 0.29 -1.3 234,473 + GFF3738 0.31 -0.6 234,473 + GFF3738 0.31 +0.4 234,473 + GFF3738 0.31 -2.7 234,473 + GFF3738 0.31 -2.4 234,474 - GFF3738 0.31 -2.3 234,474 - GFF3738 0.31 +0.3 234,474 - GFF3738 0.31 -3.1 234,474 - GFF3738 0.31 -0.3 234,629 + GFF3738 0.51 -2.8 234,629 + GFF3738 0.51 -0.5 234,629 + GFF3738 0.51 -2.5 234,629 + GFF3738 0.51 +2.4 234,629 + GFF3738 0.51 -2.1 234,629 + GFF3738 0.51 -2.7 234,629 + GFF3738 0.51 -2.9 234,629 + GFF3738 0.51 -0.3 234,629 + GFF3738 0.51 -3.5 234,629 + GFF3738 0.51 +0.1 234,629 + GFF3738 0.51 -0.6 234,629 + GFF3738 0.51 +0.6 234,630 - GFF3738 0.51 -2.2 234,630 - GFF3738 0.51 -0.1 234,630 - GFF3738 0.51 -1.6 234,630 - GFF3738 0.51 -0.1 234,630 - GFF3738 0.51 -3.0 234,630 - GFF3738 0.51 -2.3 234,630 - GFF3738 0.51 -1.7 234,630 - GFF3738 0.51 -3.1 234,630 - GFF3738 0.51 +0.6 234,630 - GFF3738 0.51 -1.0 234,630 - GFF3738 0.51 -0.3 234,630 - GFF3738 0.51 +0.3 234,630 - GFF3738 0.51 -2.3 234,630 - GFF3738 0.51 -3.5 234,630 - GFF3738 0.51 -1.3 234,630 - GFF3738 0.51 -2.2 234,719 + GFF3738 0.62 -2.6 234,720 - GFF3738 0.62 -2.6 234,720 - GFF3738 0.62 -1.6 235,061 + -2.3 235,127 + -1.8 235,128 - -1.7 235,841 + GFF3739 0.86 +0.5 235,841 + GFF3739 0.86 -1.6 235,842 - GFF3739 0.86 -2.5 235,842 - GFF3739 0.86 -1.4 235,842 - GFF3739 0.86 +0.3 235,842 - GFF3739 0.86 +1.1 235,944 - -1.6 235,981 + -3.0 235,982 - +0.1 235,982 - -1.0 236,029 + -1.4
Or see this region's nucleotide sequence