Strain Fitness in Variovorax sp. SCN45 around GFF3733

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3731 and GFF3732 are separated by 11 nucleotidesGFF3732 and GFF3733 are separated by 98 nucleotidesGFF3733 and GFF3734 overlap by 4 nucleotidesGFF3734 and GFF3735 overlap by 4 nucleotides GFF3731 - Glutathione S-transferase, at 229,367 to 230,095 GFF3731 GFF3732 - hypothetical protein, at 230,107 to 230,604 GFF3732 GFF3733 - no description, at 230,703 to 231,599 GFF3733 GFF3734 - RNA:NAD 2'-phosphotransferase, at 231,596 to 232,132 GFF3734 GFF3735 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198), at 232,129 to 233,076 GFF3735 Position (kb) 230 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 229.742 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 230.021 kb on + strand, within GFF3731at 230.075 kb on + strandat 230.075 kb on + strandat 230.075 kb on + strandat 230.094 kb on - strandat 230.195 kb on + strand, within GFF3732at 230.195 kb on + strand, within GFF3732at 230.641 kb on + strandat 230.641 kb on + strandat 230.667 kb on + strandat 230.667 kb on + strandat 230.667 kb on + strandat 230.667 kb on + strandat 230.700 kb on + strandat 230.859 kb on + strand, within GFF3733at 230.859 kb on + strand, within GFF3733at 231.015 kb on + strand, within GFF3733at 231.015 kb on + strand, within GFF3733at 231.016 kb on - strand, within GFF3733at 231.021 kb on + strand, within GFF3733at 231.021 kb on + strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.191 kb on + strand, within GFF3733at 231.192 kb on - strand, within GFF3733at 231.192 kb on - strand, within GFF3733at 231.192 kb on - strand, within GFF3733at 231.192 kb on - strand, within GFF3733at 231.224 kb on + strand, within GFF3733at 231.498 kb on + strand, within GFF3733at 231.499 kb on - strand, within GFF3733at 231.499 kb on - strand, within GFF3733at 231.629 kb on + strandat 231.629 kb on + strandat 231.629 kb on + strandat 231.629 kb on + strandat 231.629 kb on + strandat 231.630 kb on - strandat 231.630 kb on - strandat 231.630 kb on - strandat 231.630 kb on - strandat 231.630 kb on - strandat 231.785 kb on + strand, within GFF3734at 231.785 kb on + strand, within GFF3734at 231.785 kb on + strand, within GFF3734at 231.785 kb on + strand, within GFF3734at 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.173 kb on - strandat 232.173 kb on - strandat 232.198 kb on + strandat 232.199 kb on - strandat 232.199 kb on - strandat 232.428 kb on + strand, within GFF3735

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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229,742 + GFF3731 0.51 -0.7
229,883 + GFF3731 0.71 -0.8
229,883 + GFF3731 0.71 +0.7
229,883 + GFF3731 0.71 -2.4
229,883 + GFF3731 0.71 -0.5
229,883 + GFF3731 0.71 -1.4
229,883 + GFF3731 0.71 +0.4
229,883 + GFF3731 0.71 +1.1
229,884 - GFF3731 0.71 -0.8
229,884 - GFF3731 0.71 -0.9
229,884 - GFF3731 0.71 -1.8
229,884 - GFF3731 0.71 -0.6
230,021 + GFF3731 0.90 -1.1
230,075 + +1.7
230,075 + -1.5
230,075 + -2.0
230,094 - +0.7
230,195 + GFF3732 0.18 -1.9
230,195 + GFF3732 0.18 -0.7
230,641 + -1.1
230,641 + +1.1
230,667 + -0.8
230,667 + +0.7
230,667 + +2.9
230,667 + +0.8
230,700 + -1.7
230,859 + GFF3733 0.17 +2.6
230,859 + GFF3733 0.17 -0.9
231,015 + GFF3733 0.35 -0.6
231,015 + GFF3733 0.35 -0.5
231,016 - GFF3733 0.35 +1.3
231,021 + GFF3733 0.35 -1.0
231,021 + GFF3733 0.35 -1.3
231,022 - GFF3733 0.36 -0.3
231,022 - GFF3733 0.36 -0.7
231,022 - GFF3733 0.36 +1.9
231,022 - GFF3733 0.36 +0.0
231,022 - GFF3733 0.36 -1.3
231,022 - GFF3733 0.36 -0.1
231,191 + GFF3733 0.54 -2.4
231,192 - GFF3733 0.55 -1.2
231,192 - GFF3733 0.55 -1.2
231,192 - GFF3733 0.55 -1.1
231,192 - GFF3733 0.55 +1.2
231,224 + GFF3733 0.58 -2.3
231,498 + GFF3733 0.89 -1.2
231,499 - GFF3733 0.89 +0.5
231,499 - GFF3733 0.89 +1.3
231,629 + +0.3
231,629 + +1.0
231,629 + -2.2
231,629 + -1.1
231,629 + -2.0
231,630 - -1.4
231,630 - -1.3
231,630 - +0.9
231,630 - +0.4
231,630 - -3.2
231,785 + GFF3734 0.35 -1.7
231,785 + GFF3734 0.35 -2.6
231,785 + GFF3734 0.35 -0.1
231,785 + GFF3734 0.35 +1.7
232,172 + +0.3
232,172 + +2.3
232,172 + -0.7
232,172 + -2.0
232,172 + -0.1
232,172 + +1.3
232,172 + -1.7
232,173 - -0.8
232,173 - -0.3
232,198 + +0.3
232,199 - -0.7
232,199 - +1.8
232,428 + GFF3735 0.32 +0.0

Or see this region's nucleotide sequence