Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3707 and GFF3708 are separated by 19 nucleotides GFF3708 and GFF3709 are separated by 8 nucleotides
GFF3707 - ABC transporter, permease protein 1 (cluster 11, riboflavin/purine nucleoside/unknown), at 206,686 to 207,807
GFF3707
GFF3708 - ABC transporter, ATP-binding protein (cluster 11, riboflavin/purine nucleoside/unknown) / ABC transporter, ATP-binding protein (cluster 11, riboflavin/purine nucleoside/unknown), at 207,827 to 209,353
GFF3708
GFF3709 - ABC transporter, substrate-binding protein (cluster 11, riboflavin/purine nucleoside/unknown), at 209,362 to 210,471
GFF3709
Position (kb) 207
208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 206.930 kb on + strand, within GFF3707 at 206.930 kb on + strand, within GFF3707 at 207.020 kb on + strand, within GFF3707 at 207.020 kb on + strand, within GFF3707 at 207.089 kb on + strand, within GFF3707 at 207.089 kb on + strand, within GFF3707 at 207.254 kb on + strand, within GFF3707 at 207.255 kb on - strand, within GFF3707 at 207.287 kb on + strand, within GFF3707 at 207.287 kb on + strand, within GFF3707 at 207.287 kb on + strand, within GFF3707 at 207.288 kb on - strand, within GFF3707 at 207.288 kb on - strand, within GFF3707 at 207.727 kb on + strand at 207.728 kb on - strand at 207.728 kb on - strand at 207.728 kb on - strand at 208.203 kb on - strand, within GFF3708 at 208.266 kb on + strand, within GFF3708 at 208.266 kb on + strand, within GFF3708 at 208.709 kb on + strand, within GFF3708 at 208.728 kb on + strand, within GFF3708 at 208.728 kb on + strand, within GFF3708 at 208.995 kb on - strand, within GFF3708 at 209.193 kb on + strand, within GFF3708 at 209.363 kb on + strand at 209.364 kb on - strand at 209.364 kb on - strand at 209.364 kb on - strand at 209.364 kb on - strand at 209.364 kb on - strand at 209.364 kb on - strand at 209.480 kb on + strand, within GFF3709 at 209.741 kb on + strand, within GFF3709 at 209.741 kb on + strand, within GFF3709 at 209.742 kb on - strand, within GFF3709 at 209.873 kb on + strand, within GFF3709 at 209.873 kb on + strand, within GFF3709 at 209.874 kb on - strand, within GFF3709 at 209.874 kb on - strand, within GFF3709 at 210.023 kb on + strand, within GFF3709 at 210.023 kb on + strand, within GFF3709 at 210.024 kb on - strand, within GFF3709 at 210.047 kb on + strand, within GFF3709 at 210.110 kb on + strand, within GFF3709 at 210.332 kb on + strand, within GFF3709
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 206,930 + GFF3707 0.22 -0.2 206,930 + GFF3707 0.22 -1.2 207,020 + GFF3707 0.30 -0.8 207,020 + GFF3707 0.30 +0.3 207,089 + GFF3707 0.36 -0.3 207,089 + GFF3707 0.36 -1.1 207,254 + GFF3707 0.51 -1.1 207,255 - GFF3707 0.51 -1.0 207,287 + GFF3707 0.54 -0.5 207,287 + GFF3707 0.54 -0.9 207,287 + GFF3707 0.54 +0.8 207,288 - GFF3707 0.54 -0.1 207,288 - GFF3707 0.54 +1.8 207,727 + -1.0 207,728 - +0.9 207,728 - -2.2 207,728 - +0.5 208,203 - GFF3708 0.25 +0.1 208,266 + GFF3708 0.29 +0.2 208,266 + GFF3708 0.29 +3.1 208,709 + GFF3708 0.58 -0.8 208,728 + GFF3708 0.59 -2.6 208,728 + GFF3708 0.59 +1.3 208,995 - GFF3708 0.76 +2.2 209,193 + GFF3708 0.89 -2.3 209,363 + -0.1 209,364 - -1.7 209,364 - -0.3 209,364 - +1.4 209,364 - -0.7 209,364 - -2.9 209,364 - +1.3 209,480 + GFF3709 0.11 +0.0 209,741 + GFF3709 0.34 +0.8 209,741 + GFF3709 0.34 -3.1 209,742 - GFF3709 0.34 +1.7 209,873 + GFF3709 0.46 -0.9 209,873 + GFF3709 0.46 -2.1 209,874 - GFF3709 0.46 -0.6 209,874 - GFF3709 0.46 -0.9 210,023 + GFF3709 0.60 +1.6 210,023 + GFF3709 0.60 -3.0 210,024 - GFF3709 0.60 +1.8 210,047 + GFF3709 0.62 -0.2 210,110 + GFF3709 0.67 +2.0 210,332 + GFF3709 0.87 -1.1
Or see this region's nucleotide sequence