Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3694 and GFF3695 are separated by 81 nucleotides GFF3695 and GFF3696 are separated by 101 nucleotides GFF3696 and GFF3697 overlap by 4 nucleotides
GFF3694 - Phosphoesterase, PA-phosphatase related, at 193,884 to 194,597
GFF3694
GFF3695 - hypothetical protein, at 194,679 to 195,197
GFF3695
GFF3696 - mRNA 3-end processing factor, at 195,299 to 196,381
GFF3696
GFF3697 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 196,378 to 198,033
GFF3697
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 194.467 kb on - strand, within GFF3694 at 194.596 kb on - strand at 194.609 kb on + strand at 194.634 kb on + strand at 195.013 kb on - strand, within GFF3695 at 195.036 kb on + strand, within GFF3695 at 195.036 kb on + strand, within GFF3695 at 195.036 kb on + strand, within GFF3695 at 195.036 kb on + strand, within GFF3695 at 195.037 kb on - strand, within GFF3695 at 195.037 kb on - strand, within GFF3695 at 195.285 kb on + strand at 195.286 kb on - strand at 195.286 kb on - strand at 195.351 kb on - strand at 195.371 kb on + strand at 195.372 kb on - strand at 195.372 kb on - strand at 195.372 kb on - strand at 195.452 kb on + strand, within GFF3696 at 195.453 kb on - strand, within GFF3696 at 195.453 kb on - strand, within GFF3696 at 195.527 kb on + strand, within GFF3696 at 195.528 kb on - strand, within GFF3696 at 195.528 kb on - strand, within GFF3696 at 195.647 kb on + strand, within GFF3696 at 195.648 kb on - strand, within GFF3696 at 195.648 kb on - strand, within GFF3696 at 195.830 kb on + strand, within GFF3696 at 195.831 kb on - strand, within GFF3696 at 195.831 kb on - strand, within GFF3696 at 195.831 kb on - strand, within GFF3696 at 195.927 kb on - strand, within GFF3696 at 196.064 kb on + strand, within GFF3696 at 196.290 kb on - strand at 196.399 kb on + strand at 196.457 kb on - strand at 196.457 kb on - strand at 196.457 kb on - strand at 196.498 kb on + strand at 196.499 kb on - strand at 196.603 kb on + strand, within GFF3697 at 196.603 kb on + strand, within GFF3697 at 196.603 kb on + strand, within GFF3697 at 196.801 kb on + strand, within GFF3697 at 196.801 kb on + strand, within GFF3697 at 196.802 kb on - strand, within GFF3697 at 196.802 kb on - strand, within GFF3697 at 196.918 kb on + strand, within GFF3697 at 196.918 kb on + strand, within GFF3697 at 197.368 kb on + strand, within GFF3697 at 197.369 kb on - strand, within GFF3697 at 197.369 kb on - strand, within GFF3697 at 197.369 kb on - strand, within GFF3697
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 194,467 - GFF3694 0.82 -3.2 194,596 - -1.8 194,609 + -3.1 194,634 + -0.3 195,013 - GFF3695 0.64 -0.7 195,036 + GFF3695 0.69 +0.4 195,036 + GFF3695 0.69 +0.4 195,036 + GFF3695 0.69 +3.4 195,036 + GFF3695 0.69 -0.7 195,037 - GFF3695 0.69 +1.2 195,037 - GFF3695 0.69 -2.1 195,285 + +0.7 195,286 - -3.1 195,286 - -1.6 195,351 - -1.1 195,371 + -1.2 195,372 - -0.7 195,372 - -1.7 195,372 - +0.9 195,452 + GFF3696 0.14 +1.6 195,453 - GFF3696 0.14 -0.1 195,453 - GFF3696 0.14 -1.1 195,527 + GFF3696 0.21 +0.4 195,528 - GFF3696 0.21 -2.0 195,528 - GFF3696 0.21 -1.2 195,647 + GFF3696 0.32 +2.8 195,648 - GFF3696 0.32 +0.3 195,648 - GFF3696 0.32 -0.7 195,830 + GFF3696 0.49 +1.1 195,831 - GFF3696 0.49 +0.1 195,831 - GFF3696 0.49 +1.8 195,831 - GFF3696 0.49 -2.3 195,927 - GFF3696 0.58 +2.3 196,064 + GFF3696 0.71 -2.2 196,290 - -0.1 196,399 + +1.3 196,457 - +0.5 196,457 - -0.5 196,457 - -3.3 196,498 + -2.3 196,499 - +0.5 196,603 + GFF3697 0.14 -0.6 196,603 + GFF3697 0.14 -0.6 196,603 + GFF3697 0.14 -0.2 196,801 + GFF3697 0.26 -1.2 196,801 + GFF3697 0.26 +0.9 196,802 - GFF3697 0.26 -0.7 196,802 - GFF3697 0.26 -1.7 196,918 + GFF3697 0.33 +0.7 196,918 + GFF3697 0.33 -1.4 197,368 + GFF3697 0.60 -0.1 197,369 - GFF3697 0.60 -2.4 197,369 - GFF3697 0.60 +2.3 197,369 - GFF3697 0.60 -1.2
Or see this region's nucleotide sequence