Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3608 and GFF3609 overlap by 4 nucleotides GFF3609 and GFF3610 are separated by 268 nucleotides
GFF3608 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 121,434 to 122,510
GFF3608
GFF3609 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 122,507 to 123,328
GFF3609
GFF3610 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 123,597 to 124,370
GFF3610
Position (kb) 122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 121.558 kb on - strand, within GFF3608 at 121.591 kb on - strand, within GFF3608 at 121.591 kb on - strand, within GFF3608 at 121.680 kb on + strand, within GFF3608 at 121.803 kb on + strand, within GFF3608 at 121.803 kb on + strand, within GFF3608 at 121.803 kb on + strand, within GFF3608 at 121.804 kb on - strand, within GFF3608 at 121.804 kb on - strand, within GFF3608 at 121.804 kb on - strand, within GFF3608 at 121.947 kb on + strand, within GFF3608 at 121.947 kb on + strand, within GFF3608 at 121.947 kb on + strand, within GFF3608 at 121.947 kb on + strand, within GFF3608 at 121.948 kb on - strand, within GFF3608 at 121.948 kb on - strand, within GFF3608 at 122.355 kb on + strand, within GFF3608 at 122.355 kb on + strand, within GFF3608 at 122.356 kb on - strand, within GFF3608 at 122.356 kb on - strand, within GFF3608 at 122.356 kb on - strand, within GFF3608 at 122.356 kb on - strand, within GFF3608 at 122.404 kb on - strand at 122.675 kb on + strand, within GFF3609 at 122.676 kb on - strand, within GFF3609 at 122.993 kb on + strand, within GFF3609 at 122.994 kb on - strand, within GFF3609 at 123.222 kb on + strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.639 kb on + strand at 123.640 kb on - strand at 123.640 kb on - strand at 123.640 kb on - strand at 123.680 kb on - strand, within GFF3610 at 123.703 kb on + strand, within GFF3610 at 123.704 kb on - strand, within GFF3610 at 123.822 kb on + strand, within GFF3610 at 123.823 kb on - strand, within GFF3610 at 123.912 kb on + strand, within GFF3610 at 123.912 kb on + strand, within GFF3610 at 123.913 kb on - strand, within GFF3610 at 123.960 kb on + strand, within GFF3610 at 123.960 kb on + strand, within GFF3610 at 123.961 kb on - strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.967 kb on - strand, within GFF3610 at 123.967 kb on - strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 121,558 - GFF3608 0.12 -3.1 121,591 - GFF3608 0.15 -1.9 121,591 - GFF3608 0.15 -1.2 121,680 + GFF3608 0.23 -0.8 121,803 + GFF3608 0.34 -0.4 121,803 + GFF3608 0.34 -0.1 121,803 + GFF3608 0.34 +1.6 121,804 - GFF3608 0.34 -0.6 121,804 - GFF3608 0.34 -2.9 121,804 - GFF3608 0.34 -1.2 121,947 + GFF3608 0.48 -0.2 121,947 + GFF3608 0.48 -0.1 121,947 + GFF3608 0.48 +0.8 121,947 + GFF3608 0.48 -1.1 121,948 - GFF3608 0.48 +0.4 121,948 - GFF3608 0.48 -1.9 122,355 + GFF3608 0.86 -1.8 122,355 + GFF3608 0.86 +1.5 122,356 - GFF3608 0.86 -1.7 122,356 - GFF3608 0.86 +1.3 122,356 - GFF3608 0.86 -2.5 122,356 - GFF3608 0.86 -3.6 122,404 - -3.4 122,675 + GFF3609 0.20 +0.6 122,676 - GFF3609 0.21 -2.2 122,993 + GFF3609 0.59 -0.3 122,994 - GFF3609 0.59 -0.6 123,222 + GFF3609 0.87 -2.1 123,223 - GFF3609 0.87 -1.1 123,223 - GFF3609 0.87 -1.5 123,223 - GFF3609 0.87 +0.7 123,639 + -1.0 123,640 - +1.9 123,640 - +0.5 123,640 - +0.6 123,680 - GFF3610 0.11 +2.7 123,703 + GFF3610 0.14 -1.2 123,704 - GFF3610 0.14 -2.5 123,822 + GFF3610 0.29 -0.9 123,823 - GFF3610 0.29 -0.6 123,912 + GFF3610 0.41 -0.6 123,912 + GFF3610 0.41 -0.1 123,913 - GFF3610 0.41 -1.6 123,960 + GFF3610 0.47 -0.2 123,960 + GFF3610 0.47 +1.8 123,961 - GFF3610 0.47 -0.2 123,966 + GFF3610 0.48 -0.7 123,966 + GFF3610 0.48 -0.7 123,966 + GFF3610 0.48 +2.3 123,966 + GFF3610 0.48 -0.8 123,966 + GFF3610 0.48 +0.6 123,967 - GFF3610 0.48 -0.7 123,967 - GFF3610 0.48 -0.1 124,224 + GFF3610 0.81 +0.8 124,224 + GFF3610 0.81 -1.0 124,224 + GFF3610 0.81 -0.4 124,224 + GFF3610 0.81 -0.0 124,225 - GFF3610 0.81 -0.9 124,225 - GFF3610 0.81 +1.3 124,225 - GFF3610 0.81 -1.4 124,225 - GFF3610 0.81 +0.4
Or see this region's nucleotide sequence