Strain Fitness in Variovorax sp. SCN45 around GFF3597

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3596 and GFF3597 overlap by 4 nucleotidesGFF3597 and GFF3598 are separated by 92 nucleotides GFF3596 - TRAP-type C4-dicarboxylate transport system, large permease component, at 108,933 to 110,819 GFF3596 GFF3597 - TRAP-type C4-dicarboxylate transport system, small permease component, at 110,816 to 111,445 GFF3597 GFF3598 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 111,538 to 112,653 GFF3598 Position (kb) 110 111 112Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 109.874 kb on - strand, within GFF3596at 109.909 kb on + strand, within GFF3596at 109.909 kb on + strand, within GFF3596at 109.909 kb on + strand, within GFF3596at 109.909 kb on + strand, within GFF3596at 109.909 kb on + strand, within GFF3596at 109.909 kb on + strand, within GFF3596at 109.909 kb on + strand, within GFF3596at 109.910 kb on - strand, within GFF3596at 109.910 kb on - strand, within GFF3596at 109.910 kb on - strand, within GFF3596at 109.910 kb on - strand, within GFF3596at 109.910 kb on - strand, within GFF3596at 110.146 kb on + strand, within GFF3596at 110.146 kb on + strand, within GFF3596at 110.146 kb on + strand, within GFF3596at 110.146 kb on + strand, within GFF3596at 110.146 kb on + strand, within GFF3596at 110.146 kb on + strand, within GFF3596at 110.146 kb on + strand, within GFF3596at 110.146 kb on + strand, within GFF3596at 110.146 kb on + strand, within GFF3596at 110.147 kb on - strand, within GFF3596at 110.147 kb on - strand, within GFF3596at 110.147 kb on - strand, within GFF3596at 110.147 kb on - strand, within GFF3596at 110.147 kb on - strand, within GFF3596at 110.155 kb on + strand, within GFF3596at 110.155 kb on + strand, within GFF3596at 110.155 kb on + strand, within GFF3596at 110.155 kb on + strand, within GFF3596at 110.156 kb on - strand, within GFF3596at 110.156 kb on - strand, within GFF3596at 110.156 kb on - strand, within GFF3596at 110.197 kb on + strand, within GFF3596at 110.197 kb on + strand, within GFF3596at 110.197 kb on + strand, within GFF3596at 110.197 kb on + strand, within GFF3596at 110.198 kb on - strand, within GFF3596at 110.198 kb on - strand, within GFF3596at 110.198 kb on - strand, within GFF3596at 110.198 kb on - strand, within GFF3596at 110.198 kb on - strand, within GFF3596at 110.234 kb on - strand, within GFF3596at 110.317 kb on + strand, within GFF3596at 110.317 kb on + strand, within GFF3596at 110.318 kb on - strand, within GFF3596at 110.510 kb on - strand, within GFF3596at 110.510 kb on - strand, within GFF3596at 110.510 kb on - strand, within GFF3596at 110.614 kb on + strand, within GFF3596at 111.036 kb on + strand, within GFF3597at 111.036 kb on + strand, within GFF3597at 111.036 kb on + strand, within GFF3597at 111.036 kb on + strand, within GFF3597at 111.036 kb on + strand, within GFF3597at 111.036 kb on + strand, within GFF3597at 111.037 kb on - strand, within GFF3597at 111.037 kb on - strand, within GFF3597at 111.037 kb on - strand, within GFF3597at 111.037 kb on - strand, within GFF3597at 111.037 kb on - strand, within GFF3597at 111.048 kb on + strand, within GFF3597at 111.048 kb on + strand, within GFF3597at 111.049 kb on - strand, within GFF3597at 111.049 kb on - strand, within GFF3597at 111.049 kb on - strand, within GFF3597at 111.108 kb on + strand, within GFF3597at 111.108 kb on + strand, within GFF3597at 111.109 kb on - strand, within GFF3597at 111.109 kb on - strand, within GFF3597at 111.109 kb on - strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.162 kb on + strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.163 kb on - strand, within GFF3597at 111.210 kb on + strand, within GFF3597at 111.211 kb on - strand, within GFF3597at 111.253 kb on - strand, within GFF3597at 111.253 kb on - strand, within GFF3597at 111.253 kb on - strand, within GFF3597at 111.282 kb on + strand, within GFF3597at 111.283 kb on - strand, within GFF3597at 111.334 kb on - strand, within GFF3597at 111.566 kb on + strandat 111.566 kb on + strandat 111.566 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.575 kb on + strandat 111.576 kb on - strandat 111.576 kb on - strandat 111.599 kb on + strandat 111.746 kb on + strand, within GFF3598at 111.746 kb on + strand, within GFF3598at 111.746 kb on + strand, within GFF3598at 111.747 kb on - strand, within GFF3598at 111.747 kb on - strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.779 kb on + strand, within GFF3598at 111.780 kb on - strand, within GFF3598at 111.780 kb on - strand, within GFF3598at 111.780 kb on - strand, within GFF3598at 111.843 kb on - strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.199 kb on + strand, within GFF3598at 112.200 kb on - strand, within GFF3598at 112.200 kb on - strand, within GFF3598at 112.200 kb on - strand, within GFF3598at 112.200 kb on - strand, within GFF3598at 112.229 kb on + strand, within GFF3598at 112.229 kb on + strand, within GFF3598at 112.229 kb on + strand, within GFF3598at 112.229 kb on + strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.230 kb on - strand, within GFF3598at 112.262 kb on + strand, within GFF3598at 112.262 kb on + strand, within GFF3598at 112.262 kb on + strand, within GFF3598at 112.262 kb on + strand, within GFF3598at 112.263 kb on - strand, within GFF3598at 112.263 kb on - strand, within GFF3598at 112.263 kb on - strand, within GFF3598at 112.346 kb on + strand, within GFF3598at 112.347 kb on - strand, within GFF3598

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
109,874 - GFF3596 0.50 -0.1
109,909 + GFF3596 0.52 -1.7
109,909 + GFF3596 0.52 -0.7
109,909 + GFF3596 0.52 +0.4
109,909 + GFF3596 0.52 +0.4
109,909 + GFF3596 0.52 -0.9
109,909 + GFF3596 0.52 +0.3
109,909 + GFF3596 0.52 -2.9
109,910 - GFF3596 0.52 -1.1
109,910 - GFF3596 0.52 -1.1
109,910 - GFF3596 0.52 +0.1
109,910 - GFF3596 0.52 +0.7
109,910 - GFF3596 0.52 -3.1
110,146 + GFF3596 0.64 +0.0
110,146 + GFF3596 0.64 +1.4
110,146 + GFF3596 0.64 -0.3
110,146 + GFF3596 0.64 +3.0
110,146 + GFF3596 0.64 -0.1
110,146 + GFF3596 0.64 -3.2
110,146 + GFF3596 0.64 -0.3
110,146 + GFF3596 0.64 -2.1
110,146 + GFF3596 0.64 +3.5
110,147 - GFF3596 0.64 -1.3
110,147 - GFF3596 0.64 +0.3
110,147 - GFF3596 0.64 -3.3
110,147 - GFF3596 0.64 -0.7
110,147 - GFF3596 0.64 -0.9
110,155 + GFF3596 0.65 +0.3
110,155 + GFF3596 0.65 -3.7
110,155 + GFF3596 0.65 -0.1
110,155 + GFF3596 0.65 +5.1
110,156 - GFF3596 0.65 -0.9
110,156 - GFF3596 0.65 -0.2
110,156 - GFF3596 0.65 -2.1
110,197 + GFF3596 0.67 -0.4
110,197 + GFF3596 0.67 +1.4
110,197 + GFF3596 0.67 -2.3
110,197 + GFF3596 0.67 -0.7
110,198 - GFF3596 0.67 +1.3
110,198 - GFF3596 0.67 -0.6
110,198 - GFF3596 0.67 +0.2
110,198 - GFF3596 0.67 -1.3
110,198 - GFF3596 0.67 -0.3
110,234 - GFF3596 0.69 -0.3
110,317 + GFF3596 0.73 -2.1
110,317 + GFF3596 0.73 -1.2
110,318 - GFF3596 0.73 -1.4
110,510 - GFF3596 0.84 -1.6
110,510 - GFF3596 0.84 +0.1
110,510 - GFF3596 0.84 -0.7
110,614 + GFF3596 0.89 -0.0
111,036 + GFF3597 0.35 +1.2
111,036 + GFF3597 0.35 +1.0
111,036 + GFF3597 0.35 +4.8
111,036 + GFF3597 0.35 -0.0
111,036 + GFF3597 0.35 +0.5
111,036 + GFF3597 0.35 -3.0
111,037 - GFF3597 0.35 -0.3
111,037 - GFF3597 0.35 -1.6
111,037 - GFF3597 0.35 -0.8
111,037 - GFF3597 0.35 -1.7
111,037 - GFF3597 0.35 -2.1
111,048 + GFF3597 0.37 -2.7
111,048 + GFF3597 0.37 +0.6
111,049 - GFF3597 0.37 -1.6
111,049 - GFF3597 0.37 -4.6
111,049 - GFF3597 0.37 -2.1
111,108 + GFF3597 0.46 -2.9
111,108 + GFF3597 0.46 -1.1
111,109 - GFF3597 0.47 -0.1
111,109 - GFF3597 0.47 -4.4
111,109 - GFF3597 0.47 -3.5
111,162 + GFF3597 0.55 +0.9
111,162 + GFF3597 0.55 +0.4
111,162 + GFF3597 0.55 -2.4
111,162 + GFF3597 0.55 -0.6
111,162 + GFF3597 0.55 -0.8
111,162 + GFF3597 0.55 +0.3
111,162 + GFF3597 0.55 -0.4
111,162 + GFF3597 0.55 -0.9
111,163 - GFF3597 0.55 -0.7
111,163 - GFF3597 0.55 -2.8
111,163 - GFF3597 0.55 +2.5
111,163 - GFF3597 0.55 +1.3
111,163 - GFF3597 0.55 +0.9
111,163 - GFF3597 0.55 -1.1
111,163 - GFF3597 0.55 -0.3
111,163 - GFF3597 0.55 +3.8
111,163 - GFF3597 0.55 -1.2
111,163 - GFF3597 0.55 -1.3
111,210 + GFF3597 0.63 -1.2
111,211 - GFF3597 0.63 -2.1
111,253 - GFF3597 0.69 +1.3
111,253 - GFF3597 0.69 +0.7
111,253 - GFF3597 0.69 -1.1
111,282 + GFF3597 0.74 +2.3
111,283 - GFF3597 0.74 -0.4
111,334 - GFF3597 0.82 +1.3
111,566 + +1.2
111,566 + -2.1
111,566 + +0.4
111,575 + -0.7
111,575 + +0.1
111,575 + -2.2
111,575 + +0.3
111,575 + +0.8
111,575 + -0.4
111,575 + -1.4
111,575 + -1.6
111,575 + +2.1
111,575 + +1.9
111,576 - +2.5
111,576 - -0.9
111,599 + +2.3
111,746 + GFF3598 0.19 -1.2
111,746 + GFF3598 0.19 -0.9
111,746 + GFF3598 0.19 -1.6
111,747 - GFF3598 0.19 -1.4
111,747 - GFF3598 0.19 -1.3
111,779 + GFF3598 0.22 -2.1
111,779 + GFF3598 0.22 +0.2
111,779 + GFF3598 0.22 -0.6
111,779 + GFF3598 0.22 +0.8
111,779 + GFF3598 0.22 -1.1
111,779 + GFF3598 0.22 -1.4
111,779 + GFF3598 0.22 -0.1
111,779 + GFF3598 0.22 -1.1
111,779 + GFF3598 0.22 -0.7
111,780 - GFF3598 0.22 -0.7
111,780 - GFF3598 0.22 -2.4
111,780 - GFF3598 0.22 -2.6
111,843 - GFF3598 0.27 +2.3
112,199 + GFF3598 0.59 +0.1
112,199 + GFF3598 0.59 -0.2
112,199 + GFF3598 0.59 -1.0
112,199 + GFF3598 0.59 -0.1
112,199 + GFF3598 0.59 -0.7
112,199 + GFF3598 0.59 -0.5
112,199 + GFF3598 0.59 +1.1
112,199 + GFF3598 0.59 +0.3
112,199 + GFF3598 0.59 -2.0
112,200 - GFF3598 0.59 +0.3
112,200 - GFF3598 0.59 +0.4
112,200 - GFF3598 0.59 -1.1
112,200 - GFF3598 0.59 -4.7
112,229 + GFF3598 0.62 -2.0
112,229 + GFF3598 0.62 +1.4
112,229 + GFF3598 0.62 -2.3
112,229 + GFF3598 0.62 -1.6
112,230 - GFF3598 0.62 +0.5
112,230 - GFF3598 0.62 -0.4
112,230 - GFF3598 0.62 +0.7
112,230 - GFF3598 0.62 -2.9
112,230 - GFF3598 0.62 -2.2
112,230 - GFF3598 0.62 -1.1
112,230 - GFF3598 0.62 -0.6
112,262 + GFF3598 0.65 +1.4
112,262 + GFF3598 0.65 -2.3
112,262 + GFF3598 0.65 +1.1
112,262 + GFF3598 0.65 -2.1
112,263 - GFF3598 0.65 +1.9
112,263 - GFF3598 0.65 -0.9
112,263 - GFF3598 0.65 +0.4
112,346 + GFF3598 0.72 -2.7
112,347 - GFF3598 0.72 -0.1

Or see this region's nucleotide sequence