Strain Fitness in Variovorax sp. SCN45 around GFF3564

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3563 and GFF3564 are separated by 58 nucleotidesGFF3564 and GFF3565 are separated by 42 nucleotides GFF3563 - L-carnitine dehydratase/bile acid-inducible protein F, at 74,560 to 75,684 GFF3563 GFF3564 - BUG/TctC family periplasmic protein, at 75,743 to 76,720 GFF3564 GFF3565 - Acyl-CoA dehydrogenase, at 76,763 to 78,469 GFF3565 Position (kb) 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 74.861 kb on + strand, within GFF3563at 74.975 kb on + strand, within GFF3563at 74.975 kb on + strand, within GFF3563at 74.976 kb on - strand, within GFF3563at 74.976 kb on - strand, within GFF3563at 74.981 kb on + strand, within GFF3563at 74.981 kb on + strand, within GFF3563at 74.981 kb on + strand, within GFF3563at 74.982 kb on - strand, within GFF3563at 74.982 kb on - strand, within GFF3563at 74.982 kb on - strand, within GFF3563at 74.982 kb on - strand, within GFF3563at 75.077 kb on + strand, within GFF3563at 75.078 kb on - strand, within GFF3563at 75.263 kb on + strand, within GFF3563at 75.263 kb on + strand, within GFF3563at 75.263 kb on + strand, within GFF3563at 75.500 kb on + strand, within GFF3563at 75.500 kb on + strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.501 kb on - strand, within GFF3563at 75.503 kb on + strand, within GFF3563at 75.503 kb on + strand, within GFF3563at 75.503 kb on + strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.504 kb on - strand, within GFF3563at 75.614 kb on + strandat 75.615 kb on - strandat 75.981 kb on + strand, within GFF3564at 75.982 kb on - strand, within GFF3564at 75.990 kb on + strand, within GFF3564at 75.990 kb on + strand, within GFF3564at 75.991 kb on - strand, within GFF3564at 76.013 kb on + strand, within GFF3564at 76.013 kb on + strand, within GFF3564at 76.083 kb on + strand, within GFF3564at 76.083 kb on + strand, within GFF3564at 76.084 kb on - strand, within GFF3564at 76.167 kb on + strand, within GFF3564at 76.167 kb on + strand, within GFF3564at 76.167 kb on + strand, within GFF3564at 76.168 kb on - strand, within GFF3564at 76.168 kb on - strand, within GFF3564at 76.168 kb on - strand, within GFF3564at 76.168 kb on - strand, within GFF3564at 76.168 kb on - strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.254 kb on + strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.255 kb on - strand, within GFF3564at 76.284 kb on + strand, within GFF3564at 76.285 kb on - strand, within GFF3564at 76.285 kb on - strand, within GFF3564at 76.285 kb on - strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.392 kb on + strand, within GFF3564at 76.393 kb on - strand, within GFF3564at 76.393 kb on - strand, within GFF3564at 76.393 kb on - strand, within GFF3564at 76.393 kb on - strand, within GFF3564at 76.408 kb on - strand, within GFF3564at 76.485 kb on + strand, within GFF3564at 76.485 kb on + strand, within GFF3564at 76.486 kb on - strand, within GFF3564at 76.486 kb on - strand, within GFF3564at 76.486 kb on - strand, within GFF3564at 76.947 kb on + strand, within GFF3565at 76.948 kb on - strand, within GFF3565at 76.948 kb on - strand, within GFF3565at 76.948 kb on - strand, within GFF3565at 76.948 kb on - strand, within GFF3565at 76.948 kb on - strand, within GFF3565at 77.232 kb on + strand, within GFF3565at 77.233 kb on - strand, within GFF3565at 77.233 kb on - strand, within GFF3565at 77.334 kb on + strand, within GFF3565at 77.335 kb on - strand, within GFF3565at 77.616 kb on + strand, within GFF3565at 77.616 kb on + strand, within GFF3565at 77.617 kb on - strand, within GFF3565at 77.617 kb on - strand, within GFF3565at 77.617 kb on - strand, within GFF3565

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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74,861 + GFF3563 0.27 -0.7
74,975 + GFF3563 0.37 -1.4
74,975 + GFF3563 0.37 -1.8
74,976 - GFF3563 0.37 +0.3
74,976 - GFF3563 0.37 +1.0
74,981 + GFF3563 0.37 -2.3
74,981 + GFF3563 0.37 +0.3
74,981 + GFF3563 0.37 -2.2
74,982 - GFF3563 0.38 -0.7
74,982 - GFF3563 0.38 +0.3
74,982 - GFF3563 0.38 -2.7
74,982 - GFF3563 0.38 +1.3
75,077 + GFF3563 0.46 +1.8
75,078 - GFF3563 0.46 -0.9
75,263 + GFF3563 0.62 +1.3
75,263 + GFF3563 0.62 -0.3
75,263 + GFF3563 0.62 -1.6
75,500 + GFF3563 0.84 -1.7
75,500 + GFF3563 0.84 -0.1
75,501 - GFF3563 0.84 -0.7
75,501 - GFF3563 0.84 -0.8
75,501 - GFF3563 0.84 -1.8
75,501 - GFF3563 0.84 +0.3
75,501 - GFF3563 0.84 -1.6
75,501 - GFF3563 0.84 -1.2
75,501 - GFF3563 0.84 -1.3
75,503 + GFF3563 0.84 +1.5
75,503 + GFF3563 0.84 -0.6
75,503 + GFF3563 0.84 +1.4
75,504 - GFF3563 0.84 +0.7
75,504 - GFF3563 0.84 +1.9
75,504 - GFF3563 0.84 +0.1
75,504 - GFF3563 0.84 -1.7
75,504 - GFF3563 0.84 +0.5
75,504 - GFF3563 0.84 -0.5
75,504 - GFF3563 0.84 -0.9
75,504 - GFF3563 0.84 -0.0
75,614 + -1.1
75,615 - -3.4
75,981 + GFF3564 0.24 +3.8
75,982 - GFF3564 0.24 -3.5
75,990 + GFF3564 0.25 -0.1
75,990 + GFF3564 0.25 +0.8
75,991 - GFF3564 0.25 +0.1
76,013 + GFF3564 0.28 -0.0
76,013 + GFF3564 0.28 +0.7
76,083 + GFF3564 0.35 -0.9
76,083 + GFF3564 0.35 +0.2
76,084 - GFF3564 0.35 -0.6
76,167 + GFF3564 0.43 -0.6
76,167 + GFF3564 0.43 -1.9
76,167 + GFF3564 0.43 -2.1
76,168 - GFF3564 0.43 +1.4
76,168 - GFF3564 0.43 +2.1
76,168 - GFF3564 0.43 +1.8
76,168 - GFF3564 0.43 +1.3
76,168 - GFF3564 0.43 -0.7
76,254 + GFF3564 0.52 -0.7
76,254 + GFF3564 0.52 -2.6
76,254 + GFF3564 0.52 -2.4
76,254 + GFF3564 0.52 -0.6
76,254 + GFF3564 0.52 -3.3
76,254 + GFF3564 0.52 +0.2
76,254 + GFF3564 0.52 -0.6
76,254 + GFF3564 0.52 +0.4
76,254 + GFF3564 0.52 -1.2
76,255 - GFF3564 0.52 +0.6
76,255 - GFF3564 0.52 -0.9
76,255 - GFF3564 0.52 +0.3
76,255 - GFF3564 0.52 +0.1
76,255 - GFF3564 0.52 +1.4
76,255 - GFF3564 0.52 +0.1
76,255 - GFF3564 0.52 -0.8
76,255 - GFF3564 0.52 +1.5
76,255 - GFF3564 0.52 +0.2
76,284 + GFF3564 0.55 +0.9
76,285 - GFF3564 0.55 -3.1
76,285 - GFF3564 0.55 +0.8
76,285 - GFF3564 0.55 -0.7
76,392 + GFF3564 0.66 +1.6
76,392 + GFF3564 0.66 -1.3
76,392 + GFF3564 0.66 +0.5
76,392 + GFF3564 0.66 -1.6
76,392 + GFF3564 0.66 -2.6
76,392 + GFF3564 0.66 -2.7
76,393 - GFF3564 0.66 +0.5
76,393 - GFF3564 0.66 -1.0
76,393 - GFF3564 0.66 +0.3
76,393 - GFF3564 0.66 -0.7
76,408 - GFF3564 0.68 +1.5
76,485 + GFF3564 0.76 -2.1
76,485 + GFF3564 0.76 -3.4
76,486 - GFF3564 0.76 -1.3
76,486 - GFF3564 0.76 +0.3
76,486 - GFF3564 0.76 +1.5
76,947 + GFF3565 0.11 +0.9
76,948 - GFF3565 0.11 +0.1
76,948 - GFF3565 0.11 -1.1
76,948 - GFF3565 0.11 -2.6
76,948 - GFF3565 0.11 +0.2
76,948 - GFF3565 0.11 -1.7
77,232 + GFF3565 0.27 +0.9
77,233 - GFF3565 0.28 +0.3
77,233 - GFF3565 0.28 +1.0
77,334 + GFF3565 0.33 +0.5
77,335 - GFF3565 0.34 +0.9
77,616 + GFF3565 0.50 -2.6
77,616 + GFF3565 0.50 +0.3
77,617 - GFF3565 0.50 -0.1
77,617 - GFF3565 0.50 +0.3
77,617 - GFF3565 0.50 -1.4

Or see this region's nucleotide sequence