Strain Fitness in Variovorax sp. SCN45 around GFF3546

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
50,728	+		GFF3545	0.71	-0.6
50,728	+		GFF3545	0.71	+0.5
50,728	+		GFF3545	0.71	-1.4
50,728	+		GFF3545	0.71	-0.1
50,728	+		GFF3545	0.71	+0.7
50,728	+		GFF3545	0.71	+1.7
50,729	-		GFF3545	0.71	-2.0
50,729	-		GFF3545	0.71	-0.5
50,729	-		GFF3545	0.71	+1.3
50,729	-		GFF3545	0.71	-3.3
50,729	-		GFF3545	0.71	-2.0
50,729	-		GFF3545	0.71	-0.1
50,761	+		GFF3545	0.72	-0.5
50,761	+		GFF3545	0.72	+0.6
50,761	+		GFF3545	0.72	-1.1
50,761	+		GFF3545	0.72	-1.7
50,761	+		GFF3545	0.72	-0.7
50,761	+		GFF3545	0.72	+0.4
50,761	+		GFF3545	0.72	-1.7
50,761	+		GFF3545	0.72	+1.3
50,761	+		GFF3545	0.72	-0.1
50,761	+		GFF3545	0.72	+0.2
50,761	+		GFF3545	0.72	-0.1
50,761	+		GFF3545	0.72	-0.1
50,762	-		GFF3545	0.72	-3.5
50,762	-		GFF3545	0.72	-2.3
50,762	-		GFF3545	0.72	-1.4
50,762	-		GFF3545	0.72	-1.4
50,762	-		GFF3545	0.72	+0.7
50,762	-		GFF3545	0.72	-1.2
50,762	-		GFF3545	0.72	+0.7
50,762	-		GFF3545	0.72	-1.2
50,762	-		GFF3545	0.72	+1.9
50,762	-		GFF3545	0.72	+0.7
50,762	-		GFF3545	0.72	+2.3
50,857	+		GFF3545	0.76	+0.2
50,857	+		GFF3545	0.76	-0.4
50,857	+		GFF3545	0.76	-1.3
50,857	+		GFF3545	0.76	-3.2
50,857	+		GFF3545	0.76	-2.2
50,858	-		GFF3545	0.76	-1.2
50,858	-		GFF3545	0.76	-2.7
50,941	+		GFF3545	0.80	-1.1
50,942	-		GFF3545	0.80	+0.7
50,942	-		GFF3545	0.80	-0.9
50,942	-		GFF3545	0.80	-1.8
50,942	-		GFF3545	0.80	-3.3
50,942	-		GFF3545	0.80	-3.0
50,948	-		GFF3545	0.80	-1.3
51,136	+		GFF3545	0.88	-2.1
51,136	+		GFF3545	0.88	-0.4
51,136	+		GFF3545	0.88	+0.2
51,464	+				-1.2
51,464	+				-2.2
51,464	+				-1.2
51,465	-				-2.9
51,465	-				-1.6
51,465	-				-2.2
51,482	+				+0.3
51,482	+				-0.7
51,482	+				-1.4
51,482	+				-1.1
51,482	+				-3.4
51,482	+				-2.5
51,482	+				-0.3
51,482	+				-0.0
51,482	+				-2.5
51,483	-				-2.4
51,483	-				-0.1
51,483	-				-1.1
51,483	-				-2.4
51,483	-				-0.3
51,483	-				-0.5
51,483	-				-0.9
51,483	-				+0.7
51,568	+		GFF3547	0.18	-1.8
51,568	+		GFF3547	0.18	-1.7
51,568	+		GFF3547	0.18	-0.8
51,568	+		GFF3547	0.18	+0.3
51,568	+		GFF3547	0.18	-3.8
51,569	-		GFF3547	0.19	-0.9
51,673	+				+0.3
51,674	-				-0.3
51,703	+				-2.1
51,704	-				-1.4
51,704	-				-0.7
51,726	-				+0.3
51,765	-				-0.1
51,776	+				-0.3
51,860	+				-2.4
51,860	+				-1.2
51,860	+				-1.0
51,860	+				-0.3
51,861	-				-0.3
51,861	-				-1.0
51,861	-				+1.3
51,861	-				-2.2
51,861	-				-4.2
51,861	-				-2.8
51,861	-				+2.3
51,998	+		GFF3546	0.15	-1.0
52,073	+		GFF3546	0.19	-2.3
52,073	+		GFF3546	0.19	-2.1
52,073	+		GFF3546	0.19	+0.7
52,073	+		GFF3546	0.19	-3.8
52,073	+		GFF3546	0.19	-2.8
52,073	+		GFF3546	0.19	-1.5
52,074	-		GFF3546	0.19	-1.8
52,074	-		GFF3546	0.19	-1.1
52,074	-		GFF3546	0.19	+0.3
52,074	-		GFF3546	0.19	-3.0
52,074	-		GFF3546	0.19	-3.5
52,074	-		GFF3546	0.19	-1.7
52,250	+		GFF3546	0.28	-0.4
52,250	+		GFF3546	0.28	-0.9
52,250	+		GFF3546	0.28	-2.2
52,250	+		GFF3546	0.28	-0.0
52,250	+		GFF3546	0.28	-1.6
52,251	-		GFF3546	0.28	-2.3
52,251	-		GFF3546	0.28	-2.0
52,251	-		GFF3546	0.28	-2.6
52,289	+		GFF3546	0.30	-0.3
52,289	+		GFF3546	0.30	-1.8
52,289	+		GFF3546	0.30	-0.9
52,289	+		GFF3546	0.30	-1.7
52,290	-		GFF3546	0.30	-1.8
52,290	-		GFF3546	0.30	-1.7
52,290	-		GFF3546	0.30	-2.5
52,290	-		GFF3546	0.30	-4.2
52,290	-		GFF3546	0.30	-2.5
52,290	-		GFF3546	0.30	-3.5
52,451	+		GFF3546	0.38	+1.3
52,451	+		GFF3546	0.38	-3.4
52,451	+		GFF3546	0.38	+0.4
52,451	+		GFF3546	0.38	-1.0
52,452	-		GFF3546	0.38	-1.4
52,452	-		GFF3546	0.38	-0.6
52,463	+		GFF3546	0.38	+2.1
52,463	+		GFF3546	0.38	-0.5
52,463	+		GFF3546	0.38	-0.1
52,463	+		GFF3546	0.38	-1.3
52,464	-		GFF3546	0.38	-2.8
52,464	-		GFF3546	0.38	-2.9
52,464	-		GFF3546	0.38	-1.1
52,464	-		GFF3546	0.38	+0.7
52,464	-		GFF3546	0.38	-2.4
52,464	-		GFF3546	0.38	-1.5
52,464	-		GFF3546	0.38	-1.3
52,464	-		GFF3546	0.38	+0.9
52,464	-		GFF3546	0.38	-3.0
52,464	-		GFF3546	0.38	-3.0
52,484	+		GFF3546	0.39	-1.4
52,484	+		GFF3546	0.39	-2.7
52,484	+		GFF3546	0.39	-3.3
52,484	+		GFF3546	0.39	-0.9
52,485	-		GFF3546	0.39	-3.3
52,485	-		GFF3546	0.39	+0.3
52,485	-		GFF3546	0.39	+0.6
52,485	-		GFF3546	0.39	-1.7
52,535	+		GFF3546	0.42	-2.8
52,535	+		GFF3546	0.42	-2.1
52,535	+		GFF3546	0.42	-1.5
52,536	-		GFF3546	0.42	+2.3
52,536	-		GFF3546	0.42	-0.1
52,536	-		GFF3546	0.42	-5.0
52,536	-		GFF3546	0.42	-1.3
52,536	-		GFF3546	0.42	-1.5
52,550	+		GFF3546	0.42	-2.4
52,550	+		GFF3546	0.42	-3.2
52,550	+		GFF3546	0.42	-4.6
52,550	+		GFF3546	0.42	-0.6
52,550	+		GFF3546	0.42	+1.1
52,550	+		GFF3546	0.42	-4.0
52,550	+		GFF3546	0.42	-1.7
52,550	+		GFF3546	0.42	+0.4
52,550	+		GFF3546	0.42	-0.3
52,550	+		GFF3546	0.42	-3.2
52,550	+		GFF3546	0.42	-1.6
52,550	+		GFF3546	0.42	-3.3
52,550	+		GFF3546	0.42	-3.2
52,550	+		GFF3546	0.42	+0.7
52,550	+		GFF3546	0.42	-3.2
52,550	+		GFF3546	0.42	-1.3
52,550	+		GFF3546	0.42	-2.5
52,550	+		GFF3546	0.42	+0.3
52,550	+		GFF3546	0.42	-1.2
52,550	+		GFF3546	0.42	-0.7
52,550	+		GFF3546	0.42	+0.7
52,551	-		GFF3546	0.42	-2.9
52,551	-		GFF3546	0.42	-0.6
52,551	-		GFF3546	0.42	-2.6
52,551	-		GFF3546	0.42	-0.9
52,551	-		GFF3546	0.42	-0.3
52,551	-		GFF3546	0.42	+0.1
52,551	-		GFF3546	0.42	-2.6
52,551	-		GFF3546	0.42	-4.0
52,551	-		GFF3546	0.42	-1.5
52,551	-		GFF3546	0.42	-0.7
52,551	-		GFF3546	0.42	-2.5
52,551	-		GFF3546	0.42	-0.4
52,551	-		GFF3546	0.42	-2.7
52,551	-		GFF3546	0.42	-1.2
52,613	+		GFF3546	0.46	+3.4
52,613	+		GFF3546	0.46	-2.4
52,613	+		GFF3546	0.46	-2.6
52,613	+		GFF3546	0.46	-1.3
52,613	+		GFF3546	0.46	-0.3
52,614	-		GFF3546	0.46	-0.1
52,614	-		GFF3546	0.46	+1.3
52,614	-		GFF3546	0.46	-0.7
52,614	-		GFF3546	0.46	-4.2
52,614	-		GFF3546	0.46	-1.2
52,664	+		GFF3546	0.48	-3.6
52,664	+		GFF3546	0.48	-0.6
52,664	+		GFF3546	0.48	+0.8
52,664	+		GFF3546	0.48	+2.3
52,664	+		GFF3546	0.48	-2.6
52,664	+		GFF3546	0.48	-2.5
52,665	-		GFF3546	0.48	+0.2
52,665	-		GFF3546	0.48	-0.7
52,973	+		GFF3546	0.63	-0.7
52,973	+		GFF3546	0.63	-2.6
52,973	+		GFF3546	0.63	-1.3
52,973	+		GFF3546	0.63	+0.3
52,973	+		GFF3546	0.63	-0.2
52,974	-		GFF3546	0.63	-0.1
52,974	-		GFF3546	0.63	-0.9
52,974	-		GFF3546	0.63	-2.3
52,985	+		GFF3546	0.64	+0.7
52,985	+		GFF3546	0.64	-0.5
52,985	+		GFF3546	0.64	-0.5
52,986	-		GFF3546	0.64	-2.1
52,986	-		GFF3546	0.64	-2.2
53,067	-		GFF3546	0.68	+0.7
53,111	+		GFF3546	0.70	-3.0
53,111	+		GFF3546	0.70	-4.1
53,111	+		GFF3546	0.70	-1.1
53,111	+		GFF3546	0.70	-1.1
53,111	+		GFF3546	0.70	-1.6
53,111	+		GFF3546	0.70	-2.7
53,111	+		GFF3546	0.70	+0.7
53,111	+		GFF3546	0.70	-1.6
53,111	+		GFF3546	0.70	-1.4
53,112	-		GFF3546	0.70	-1.1
53,112	-		GFF3546	0.70	-0.7
53,112	-		GFF3546	0.70	-4.2
53,112	-		GFF3546	0.70	-4.3
53,112	-		GFF3546	0.70	-2.9
53,112	-		GFF3546	0.70	-2.3
53,112	-		GFF3546	0.70	-3.7
53,112	-		GFF3546	0.70	-3.4
53,147	+		GFF3546	0.72	+0.3
53,147	+		GFF3546	0.72	+0.7
53,147	+		GFF3546	0.72	-0.6
53,147	+		GFF3546	0.72	-1.1
53,147	+		GFF3546	0.72	-2.4
53,147	+		GFF3546	0.72	+0.3
53,148	-		GFF3546	0.72	-3.4
53,148	-		GFF3546	0.72	-1.3
53,148	-		GFF3546	0.72	+0.2
53,148	-		GFF3546	0.72	-2.7
53,148	-		GFF3546	0.72	+2.0
53,148	-		GFF3546	0.72	-0.6
53,148	-		GFF3546	0.72	-2.8
53,148	-		GFF3546	0.72	-0.3
53,148	-		GFF3546	0.72	-3.6
53,148	-		GFF3546	0.72	-1.6
53,148	-		GFF3546	0.72	+1.3
53,148	-		GFF3546	0.72	-1.4
53,150	+		GFF3546	0.72	-0.8
53,150	+		GFF3546	0.72	-2.1
53,150	+		GFF3546	0.72	-4.3
53,150	+		GFF3546	0.72	+0.3
53,150	+		GFF3546	0.72	-3.8
53,150	+		GFF3546	0.72	-0.7
53,150	+		GFF3546	0.72	-2.1
53,150	+		GFF3546	0.72	-2.1
53,150	+		GFF3546	0.72	-1.9
53,150	+		GFF3546	0.72	+1.0
53,150	+		GFF3546	0.72	-3.4
53,150	+		GFF3546	0.72	-2.8
53,150	+		GFF3546	0.72	+1.2
53,150	+		GFF3546	0.72	-1.0
53,151	-		GFF3546	0.72	+1.4
53,151	-		GFF3546	0.72	+2.3
53,151	-		GFF3546	0.72	-1.2
53,151	-		GFF3546	0.72	-1.7
53,151	-		GFF3546	0.72	+0.7
53,151	-		GFF3546	0.72	-3.1
53,151	-		GFF3546	0.72	-0.3
53,151	-		GFF3546	0.72	-0.6
53,267	+		GFF3546	0.78	-2.8
53,267	+		GFF3546	0.78	+0.7
53,267	+		GFF3546	0.78	+1.3
53,267	+		GFF3546	0.78	-2.6
53,267	+		GFF3546	0.78	-2.9
53,268	-		GFF3546	0.78	-2.9
53,268	-		GFF3546	0.78	-0.3
53,268	-		GFF3546	0.78	-2.3
53,268	-		GFF3546	0.78	-4.8
53,268	-		GFF3546	0.78	-1.1
53,690	+				-2.5
53,690	+				-1.4
53,690	+				-0.1
53,691	-				+3.7
53,691	-				-2.7
53,691	-				-3.3
53,691	-				-1.7
53,691	-				-1.4
53,806	+		GFF3548	0.14	+0.1
53,807	-		GFF3548	0.14	-1.8
53,807	-		GFF3548	0.14	-0.8
53,807	-		GFF3548	0.14	-3.5
54,013	+		GFF3548	0.48	-1.8
54,013	+		GFF3548	0.48	+1.7
54,013	+		GFF3548	0.48	-1.7
54,013	+		GFF3548	0.48	-2.3
54,013	+		GFF3548	0.48	-1.2
54,013	+		GFF3548	0.48	-1.8
54,013	+		GFF3548	0.48	-3.7
54,013	+		GFF3548	0.48	-1.0
54,014	-		GFF3548	0.48	-0.6
54,014	-		GFF3548	0.48	-0.9
54,014	-		GFF3548	0.48	-0.8
54,096	+		GFF3548	0.61	-2.3
54,115	+		GFF3548	0.64	-3.1
54,115	+		GFF3548	0.64	+0.3
54,116	-		GFF3548	0.64	+0.0
54,116	-		GFF3548	0.64	+1.6
54,116	-		GFF3548	0.64	+0.9
54,116	-		GFF3548	0.64	+0.7
54,256	+		GFF3548	0.87	-1.1
54,256	+		GFF3548	0.87	+0.3
54,256	+		GFF3548	0.87	+0.3
54,257	-		GFF3548	0.87	+1.8
54,257	-		GFF3548	0.87	+3.1
54,257	-		GFF3548	0.87	+0.2
54,257	-		GFF3548	0.87	-0.9
54,257	-		GFF3548	0.87	-0.7
54,257	-		GFF3548	0.87	+0.7
54,540	-		GFF3549	0.11	+1.1