Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3482 and GFF3483 overlap by 4 nucleotides GFF3483 and GFF3484 are separated by 67 nucleotides GFF3484 and GFF3485 are separated by 95 nucleotides GFF3485 and GFF3486 are separated by 19 nucleotides
GFF3482 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 304,590 to 305,552
GFF3482
GFF3483 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 305,549 to 306,409
GFF3483
GFF3484 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 306,477 to 307,670
GFF3484
GFF3485 - Ferredoxin, 2Fe-2S, at 307,766 to 308,089
GFF3485
GFF3486 - glutamine synthetase family protein, at 308,109 to 309,557
GFF3486
Position (kb) 306
307
308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 305.616 kb on + strand at 305.616 kb on + strand at 305.616 kb on + strand at 305.616 kb on + strand at 305.616 kb on + strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.617 kb on - strand at 305.646 kb on + strand, within GFF3483 at 305.646 kb on + strand, within GFF3483 at 305.646 kb on + strand, within GFF3483 at 305.646 kb on + strand, within GFF3483 at 305.646 kb on + strand, within GFF3483 at 305.647 kb on - strand, within GFF3483 at 305.649 kb on + strand, within GFF3483 at 305.649 kb on + strand, within GFF3483 at 305.649 kb on + strand, within GFF3483 at 305.649 kb on + strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.650 kb on - strand, within GFF3483 at 305.745 kb on + strand, within GFF3483 at 305.754 kb on + strand, within GFF3483 at 305.754 kb on + strand, within GFF3483 at 305.754 kb on + strand, within GFF3483 at 305.755 kb on - strand, within GFF3483 at 305.755 kb on - strand, within GFF3483 at 305.755 kb on - strand, within GFF3483 at 306.020 kb on + strand, within GFF3483 at 306.084 kb on + strand, within GFF3483 at 306.084 kb on + strand, within GFF3483 at 306.085 kb on - strand, within GFF3483 at 306.156 kb on + strand, within GFF3483 at 306.157 kb on - strand, within GFF3483 at 306.169 kb on - strand, within GFF3483 at 306.277 kb on - strand, within GFF3483 at 306.277 kb on - strand, within GFF3483 at 306.378 kb on + strand at 306.379 kb on - strand at 306.379 kb on - strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.478 kb on + strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.479 kb on - strand at 306.571 kb on + strand at 306.571 kb on + strand at 306.571 kb on + strand at 306.571 kb on + strand at 306.572 kb on - strand at 306.572 kb on - strand at 306.572 kb on - strand at 306.572 kb on - strand at 306.572 kb on - strand at 306.727 kb on + strand, within GFF3484 at 306.746 kb on - strand, within GFF3484 at 306.746 kb on - strand, within GFF3484 at 306.829 kb on + strand, within GFF3484 at 306.829 kb on + strand, within GFF3484 at 306.829 kb on + strand, within GFF3484 at 306.829 kb on + strand, within GFF3484 at 306.829 kb on + strand, within GFF3484 at 306.830 kb on - strand, within GFF3484 at 306.830 kb on - strand, within GFF3484 at 306.830 kb on - strand, within GFF3484 at 306.880 kb on + strand, within GFF3484 at 306.880 kb on + strand, within GFF3484 at 306.880 kb on + strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 306.881 kb on - strand, within GFF3484 at 307.036 kb on + strand, within GFF3484 at 307.037 kb on - strand, within GFF3484 at 307.037 kb on - strand, within GFF3484 at 307.037 kb on - strand, within GFF3484 at 307.037 kb on - strand, within GFF3484 at 307.165 kb on + strand, within GFF3484 at 307.165 kb on + strand, within GFF3484 at 307.165 kb on + strand, within GFF3484 at 307.165 kb on + strand, within GFF3484 at 307.166 kb on - strand, within GFF3484 at 307.195 kb on + strand, within GFF3484 at 307.195 kb on + strand, within GFF3484 at 307.195 kb on + strand, within GFF3484 at 307.195 kb on + strand, within GFF3484 at 307.195 kb on + strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.196 kb on - strand, within GFF3484 at 307.249 kb on + strand, within GFF3484 at 307.249 kb on + strand, within GFF3484 at 307.336 kb on + strand, within GFF3484 at 307.337 kb on - strand, within GFF3484 at 307.498 kb on + strand, within GFF3484 at 307.498 kb on - strand, within GFF3484 at 307.532 kb on - strand, within GFF3484 at 307.552 kb on + strand at 307.552 kb on + strand at 307.552 kb on + strand at 307.552 kb on + strand at 307.552 kb on + strand at 307.552 kb on + strand at 307.552 kb on + strand at 307.553 kb on - strand at 307.935 kb on + strand, within GFF3485 at 307.936 kb on - strand, within GFF3485 at 307.936 kb on - strand, within GFF3485 at 307.936 kb on - strand, within GFF3485 at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.073 kb on + strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.074 kb on - strand at 308.075 kb on - strand at 308.197 kb on + strand at 308.197 kb on + strand at 308.197 kb on + strand at 308.198 kb on - strand at 308.380 kb on + strand, within GFF3486 at 308.380 kb on + strand, within GFF3486 at 308.380 kb on + strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.381 kb on - strand, within GFF3486 at 308.387 kb on - strand, within GFF3486 at 308.387 kb on - strand, within GFF3486 at 308.533 kb on + strand, within GFF3486 at 308.533 kb on + strand, within GFF3486 at 308.534 kb on - strand, within GFF3486 at 308.534 kb on - strand, within GFF3486 at 308.534 kb on - strand, within GFF3486 at 308.534 kb on - strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.599 kb on + strand, within GFF3486 at 308.600 kb on - strand, within GFF3486 at 308.600 kb on - strand, within GFF3486
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 305,616 + +1.4 305,616 + -0.1 305,616 + -2.9 305,616 + +0.1 305,616 + -1.2 305,617 - -0.4 305,617 - -0.2 305,617 - +0.4 305,617 - -0.7 305,617 - +0.0 305,617 - -1.9 305,617 - -2.8 305,617 - +1.2 305,617 - -3.7 305,646 + GFF3483 0.11 -2.7 305,646 + GFF3483 0.11 -3.4 305,646 + GFF3483 0.11 -2.8 305,646 + GFF3483 0.11 +0.4 305,646 + GFF3483 0.11 -1.2 305,647 - GFF3483 0.11 +0.2 305,649 + GFF3483 0.12 -0.8 305,649 + GFF3483 0.12 -1.3 305,649 + GFF3483 0.12 +3.1 305,649 + GFF3483 0.12 +0.2 305,650 - GFF3483 0.12 -2.2 305,650 - GFF3483 0.12 -0.1 305,650 - GFF3483 0.12 -0.8 305,650 - GFF3483 0.12 -0.6 305,650 - GFF3483 0.12 +0.7 305,650 - GFF3483 0.12 -1.3 305,650 - GFF3483 0.12 +0.9 305,745 + GFF3483 0.23 -0.9 305,754 + GFF3483 0.24 +2.2 305,754 + GFF3483 0.24 +0.1 305,754 + GFF3483 0.24 +0.7 305,755 - GFF3483 0.24 +1.4 305,755 - GFF3483 0.24 -0.8 305,755 - GFF3483 0.24 -1.8 306,020 + GFF3483 0.55 +1.4 306,084 + GFF3483 0.62 -0.9 306,084 + GFF3483 0.62 -1.8 306,085 - GFF3483 0.62 -1.6 306,156 + GFF3483 0.70 -0.9 306,157 - GFF3483 0.71 +1.3 306,169 - GFF3483 0.72 -1.3 306,277 - GFF3483 0.85 +0.2 306,277 - GFF3483 0.85 -0.7 306,378 + -0.6 306,379 - +0.6 306,379 - -2.2 306,478 + -0.9 306,478 + -1.2 306,478 + -1.4 306,478 + -1.3 306,478 + +0.1 306,478 + +0.3 306,478 + -2.3 306,478 + -1.8 306,478 + +0.7 306,479 - +0.1 306,479 - -3.2 306,479 - +0.6 306,479 - -0.3 306,479 - -1.3 306,479 - -2.3 306,479 - -0.6 306,479 - -1.9 306,571 + +3.7 306,571 + +0.9 306,571 + -0.7 306,571 + -2.5 306,572 - -0.4 306,572 - +1.2 306,572 - -1.6 306,572 - -0.9 306,572 - +0.1 306,727 + GFF3484 0.21 +0.8 306,746 - GFF3484 0.23 -1.1 306,746 - GFF3484 0.23 +0.1 306,829 + GFF3484 0.29 -1.1 306,829 + GFF3484 0.29 +0.5 306,829 + GFF3484 0.29 +0.2 306,829 + GFF3484 0.29 -0.7 306,829 + GFF3484 0.29 -2.6 306,830 - GFF3484 0.30 -1.6 306,830 - GFF3484 0.30 -2.7 306,830 - GFF3484 0.30 -2.9 306,880 + GFF3484 0.34 +0.8 306,880 + GFF3484 0.34 +0.1 306,880 + GFF3484 0.34 +0.7 306,881 - GFF3484 0.34 -0.2 306,881 - GFF3484 0.34 +0.0 306,881 - GFF3484 0.34 +0.1 306,881 - GFF3484 0.34 +1.0 306,881 - GFF3484 0.34 -0.8 306,881 - GFF3484 0.34 -0.4 307,036 + GFF3484 0.47 +0.2 307,037 - GFF3484 0.47 -3.3 307,037 - GFF3484 0.47 +0.1 307,037 - GFF3484 0.47 +1.8 307,037 - GFF3484 0.47 +0.1 307,165 + GFF3484 0.58 +1.1 307,165 + GFF3484 0.58 +0.4 307,165 + GFF3484 0.58 +1.4 307,165 + GFF3484 0.58 +1.3 307,166 - GFF3484 0.58 -0.2 307,195 + GFF3484 0.60 -1.5 307,195 + GFF3484 0.60 +0.2 307,195 + GFF3484 0.60 -2.8 307,195 + GFF3484 0.60 -1.3 307,195 + GFF3484 0.60 -1.8 307,196 - GFF3484 0.60 +0.2 307,196 - GFF3484 0.60 +0.3 307,196 - GFF3484 0.60 +0.3 307,196 - GFF3484 0.60 -2.1 307,196 - GFF3484 0.60 +0.7 307,196 - GFF3484 0.60 +5.4 307,196 - GFF3484 0.60 -1.1 307,249 + GFF3484 0.65 -0.9 307,249 + GFF3484 0.65 -0.4 307,336 + GFF3484 0.72 -0.9 307,337 - GFF3484 0.72 -0.2 307,498 + GFF3484 0.86 +0.1 307,498 - GFF3484 0.86 +0.2 307,532 - GFF3484 0.88 -1.2 307,552 + -2.9 307,552 + -0.4 307,552 + +1.7 307,552 + -0.9 307,552 + +3.4 307,552 + +1.8 307,552 + +0.9 307,553 - +0.5 307,935 + GFF3485 0.52 -2.5 307,936 - GFF3485 0.52 -2.7 307,936 - GFF3485 0.52 +2.4 307,936 - GFF3485 0.52 -1.7 308,073 + +1.1 308,073 + -2.9 308,073 + -1.2 308,073 + +0.1 308,073 + -3.0 308,073 + +0.1 308,073 + +1.5 308,073 + -2.2 308,073 + -1.4 308,073 + -2.8 308,073 + -1.4 308,073 + -1.0 308,073 + +0.6 308,074 - +0.5 308,074 - -0.8 308,074 - -0.5 308,074 - -0.4 308,074 - -2.2 308,074 - -0.6 308,074 - +1.7 308,074 - -2.9 308,074 - -0.2 308,074 - -1.2 308,074 - -2.4 308,074 - +1.3 308,074 - -0.2 308,074 - -1.0 308,074 - -2.3 308,075 - +0.2 308,197 + -1.4 308,197 + +0.4 308,197 + +0.4 308,198 - -0.1 308,380 + GFF3486 0.19 +0.1 308,380 + GFF3486 0.19 -1.1 308,380 + GFF3486 0.19 +0.9 308,381 - GFF3486 0.19 +1.5 308,381 - GFF3486 0.19 -0.4 308,381 - GFF3486 0.19 -0.4 308,381 - GFF3486 0.19 +0.8 308,381 - GFF3486 0.19 -2.0 308,381 - GFF3486 0.19 +0.2 308,387 - GFF3486 0.19 -2.1 308,387 - GFF3486 0.19 -0.2 308,533 + GFF3486 0.29 +0.1 308,533 + GFF3486 0.29 -1.2 308,534 - GFF3486 0.29 -1.6 308,534 - GFF3486 0.29 -2.3 308,534 - GFF3486 0.29 -1.8 308,534 - GFF3486 0.29 -0.6 308,599 + GFF3486 0.34 +1.6 308,599 + GFF3486 0.34 +0.8 308,599 + GFF3486 0.34 -1.1 308,599 + GFF3486 0.34 -3.6 308,599 + GFF3486 0.34 -2.1 308,599 + GFF3486 0.34 +0.4 308,599 + GFF3486 0.34 -0.8 308,599 + GFF3486 0.34 +0.7 308,599 + GFF3486 0.34 -0.7 308,599 + GFF3486 0.34 +0.7 308,599 + GFF3486 0.34 -1.3 308,600 - GFF3486 0.34 -2.6 308,600 - GFF3486 0.34 +1.5
Or see this region's nucleotide sequence