Strain Fitness in Variovorax sp. SCN45 around GFF3443

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3441 and GFF3442 are separated by 86 nucleotidesGFF3442 and GFF3443 are separated by 6 nucleotidesGFF3443 and GFF3444 overlap by 1 nucleotides GFF3441 - Hypothetical protein VC0266 (sugar utilization related?), at 264,509 to 265,087 GFF3441 GFF3442 - RidA/YER057c/UK114 superfamily protein, at 265,174 to 265,578 GFF3442 GFF3443 - hypothetical protein, at 265,585 to 267,348 GFF3443 GFF3444 - BUG/TctC family periplasmic protein, at 267,348 to 268,337 GFF3444 Position (kb) 265 266 267 268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 264.722 kb on + strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.758 kb on + strand, within GFF3441at 264.759 kb on - strand, within GFF3441at 264.759 kb on - strand, within GFF3441at 264.873 kb on + strand, within GFF3441at 264.873 kb on + strand, within GFF3441at 264.874 kb on - strand, within GFF3441at 264.874 kb on - strand, within GFF3441at 264.882 kb on - strand, within GFF3441at 264.954 kb on - strand, within GFF3441at 265.097 kb on + strandat 265.098 kb on - strandat 265.098 kb on - strandat 265.098 kb on - strandat 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.423 kb on + strand, within GFF3442at 265.423 kb on + strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.637 kb on + strandat 265.637 kb on + strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.638 kb on - strandat 265.806 kb on - strand, within GFF3443at 265.913 kb on + strand, within GFF3443at 265.913 kb on + strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 265.914 kb on - strand, within GFF3443at 266.039 kb on + strand, within GFF3443at 266.039 kb on + strand, within GFF3443at 266.039 kb on + strand, within GFF3443at 266.040 kb on - strand, within GFF3443at 266.040 kb on - strand, within GFF3443at 266.040 kb on - strand, within GFF3443at 266.261 kb on + strand, within GFF3443at 266.261 kb on + strand, within GFF3443at 266.261 kb on + strand, within GFF3443at 266.262 kb on - strand, within GFF3443at 266.303 kb on + strand, within GFF3443at 266.303 kb on + strand, within GFF3443at 266.303 kb on + strand, within GFF3443at 266.304 kb on - strand, within GFF3443at 266.304 kb on - strand, within GFF3443at 266.304 kb on - strand, within GFF3443at 266.436 kb on - strand, within GFF3443at 266.436 kb on - strand, within GFF3443at 266.594 kb on + strand, within GFF3443at 266.594 kb on + strand, within GFF3443at 266.594 kb on + strand, within GFF3443at 266.595 kb on - strand, within GFF3443at 266.595 kb on - strand, within GFF3443at 266.595 kb on - strand, within GFF3443at 266.743 kb on + strand, within GFF3443at 266.743 kb on + strand, within GFF3443at 266.756 kb on + strand, within GFF3443at 266.756 kb on + strand, within GFF3443at 266.771 kb on + strand, within GFF3443at 266.771 kb on + strand, within GFF3443at 266.771 kb on + strand, within GFF3443at 266.771 kb on + strand, within GFF3443at 266.772 kb on - strand, within GFF3443at 266.772 kb on - strand, within GFF3443at 266.772 kb on - strand, within GFF3443at 266.772 kb on - strand, within GFF3443at 266.963 kb on + strand, within GFF3443at 267.577 kb on + strand, within GFF3444at 267.577 kb on + strand, within GFF3444at 267.578 kb on - strand, within GFF3444at 267.578 kb on - strand, within GFF3444at 267.856 kb on + strand, within GFF3444at 267.856 kb on + strand, within GFF3444at 267.856 kb on + strand, within GFF3444at 267.857 kb on - strand, within GFF3444at 267.857 kb on - strand, within GFF3444at 267.992 kb on - strand, within GFF3444at 268.007 kb on - strand, within GFF3444at 268.054 kb on + strand, within GFF3444

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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264,722 + GFF3441 0.37 -2.3
264,723 - GFF3441 0.37 +0.1
264,723 - GFF3441 0.37 +0.6
264,723 - GFF3441 0.37 +0.1
264,723 - GFF3441 0.37 +3.0
264,723 - GFF3441 0.37 -0.8
264,758 + GFF3441 0.43 -1.0
264,759 - GFF3441 0.43 +0.1
264,759 - GFF3441 0.43 -0.0
264,873 + GFF3441 0.63 +3.2
264,873 + GFF3441 0.63 -0.1
264,874 - GFF3441 0.63 -1.2
264,874 - GFF3441 0.63 -0.2
264,882 - GFF3441 0.64 +0.6
264,954 - GFF3441 0.77 +1.6
265,097 + -1.2
265,098 - -2.1
265,098 - -2.4
265,098 - -2.7
265,270 + GFF3442 0.24 +1.5
265,270 + GFF3442 0.24 -2.4
265,270 + GFF3442 0.24 -0.6
265,270 + GFF3442 0.24 -4.2
265,270 + GFF3442 0.24 -1.3
265,270 + GFF3442 0.24 +0.4
265,270 + GFF3442 0.24 -1.3
265,270 + GFF3442 0.24 -1.0
265,270 + GFF3442 0.24 +0.1
265,270 + GFF3442 0.24 -0.6
265,271 - GFF3442 0.24 +0.4
265,271 - GFF3442 0.24 -1.3
265,271 - GFF3442 0.24 -1.6
265,271 - GFF3442 0.24 +2.4
265,271 - GFF3442 0.24 +0.5
265,271 - GFF3442 0.24 +0.8
265,271 - GFF3442 0.24 +1.1
265,271 - GFF3442 0.24 -0.4
265,271 - GFF3442 0.24 -0.4
265,423 + GFF3442 0.61 -2.3
265,423 + GFF3442 0.61 +0.9
265,424 - GFF3442 0.62 -2.1
265,424 - GFF3442 0.62 -0.2
265,424 - GFF3442 0.62 -0.3
265,424 - GFF3442 0.62 -0.4
265,424 - GFF3442 0.62 -1.2
265,465 + GFF3442 0.72 +0.8
265,465 + GFF3442 0.72 -1.9
265,465 + GFF3442 0.72 -2.1
265,465 + GFF3442 0.72 +1.0
265,465 + GFF3442 0.72 -2.1
265,465 + GFF3442 0.72 -1.7
265,465 + GFF3442 0.72 -0.7
265,465 + GFF3442 0.72 -1.1
265,465 + GFF3442 0.72 +0.8
265,465 + GFF3442 0.72 +3.0
265,466 - GFF3442 0.72 -0.4
265,466 - GFF3442 0.72 -1.5
265,466 - GFF3442 0.72 +1.0
265,466 - GFF3442 0.72 -0.7
265,466 - GFF3442 0.72 -0.3
265,637 + +2.4
265,637 + -1.2
265,638 - -2.1
265,638 - -1.8
265,638 - +0.6
265,638 - +0.2
265,638 - -0.9
265,806 - GFF3443 0.13 -2.4
265,913 + GFF3443 0.19 -1.2
265,913 + GFF3443 0.19 -0.4
265,914 - GFF3443 0.19 +1.4
265,914 - GFF3443 0.19 +0.8
265,914 - GFF3443 0.19 +0.3
265,914 - GFF3443 0.19 -1.5
265,914 - GFF3443 0.19 -0.5
265,914 - GFF3443 0.19 -0.6
265,914 - GFF3443 0.19 +0.0
266,039 + GFF3443 0.26 +1.3
266,039 + GFF3443 0.26 -0.4
266,039 + GFF3443 0.26 -0.6
266,040 - GFF3443 0.26 -0.3
266,040 - GFF3443 0.26 -1.1
266,040 - GFF3443 0.26 +2.4
266,261 + GFF3443 0.38 -0.3
266,261 + GFF3443 0.38 +2.0
266,261 + GFF3443 0.38 -1.4
266,262 - GFF3443 0.38 +1.2
266,303 + GFF3443 0.41 +1.1
266,303 + GFF3443 0.41 +1.4
266,303 + GFF3443 0.41 +0.8
266,304 - GFF3443 0.41 -3.2
266,304 - GFF3443 0.41 +1.4
266,304 - GFF3443 0.41 -1.1
266,436 - GFF3443 0.48 -1.4
266,436 - GFF3443 0.48 +0.1
266,594 + GFF3443 0.57 -0.2
266,594 + GFF3443 0.57 +0.2
266,594 + GFF3443 0.57 -0.8
266,595 - GFF3443 0.57 +0.4
266,595 - GFF3443 0.57 +0.4
266,595 - GFF3443 0.57 -0.8
266,743 + GFF3443 0.66 +0.3
266,743 + GFF3443 0.66 -0.4
266,756 + GFF3443 0.66 -0.5
266,756 + GFF3443 0.66 -2.0
266,771 + GFF3443 0.67 +1.4
266,771 + GFF3443 0.67 +0.4
266,771 + GFF3443 0.67 -1.1
266,771 + GFF3443 0.67 -3.6
266,772 - GFF3443 0.67 -2.4
266,772 - GFF3443 0.67 +1.5
266,772 - GFF3443 0.67 +1.2
266,772 - GFF3443 0.67 -1.1
266,963 + GFF3443 0.78 +0.9
267,577 + GFF3444 0.23 +2.1
267,577 + GFF3444 0.23 -2.6
267,578 - GFF3444 0.23 -1.3
267,578 - GFF3444 0.23 -2.9
267,856 + GFF3444 0.51 -1.5
267,856 + GFF3444 0.51 -2.3
267,856 + GFF3444 0.51 +0.5
267,857 - GFF3444 0.51 +0.9
267,857 - GFF3444 0.51 -1.9
267,992 - GFF3444 0.65 +1.5
268,007 - GFF3444 0.67 +0.7
268,054 + GFF3444 0.71 -0.8

Or see this region's nucleotide sequence