Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3393 and GFF3394 overlap by 1 nucleotides GFF3394 and GFF3395 are separated by 127 nucleotides GFF3395 and GFF3396 overlap by 4 nucleotides
GFF3393 - Benzoate ABC transporter, ATP-binding protein 2, at 216,133 to 216,834
GFF3393
GFF3394 - Benzoate ABC transporter, ATP-binding protein 1, at 216,834 to 217,583
GFF3394
GFF3395 - Benzoate ABC transporter, permease protein 2, at 217,711 to 218,661
GFF3395
GFF3396 - Benzoate ABC transporter, permease protein 1, at 218,658 to 219,530
GFF3396
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 216.803 kb on + strand at 216.804 kb on - strand at 216.804 kb on - strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.807 kb on - strand at 216.807 kb on - strand at 217.331 kb on - strand, within GFF3394 at 218.054 kb on + strand, within GFF3395 at 218.055 kb on - strand, within GFF3395 at 218.160 kb on - strand, within GFF3395 at 218.189 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.250 kb on - strand, within GFF3395 at 218.250 kb on - strand, within GFF3395 at 218.336 kb on + strand, within GFF3395 at 218.336 kb on + strand, within GFF3395 at 218.337 kb on - strand, within GFF3395 at 218.382 kb on - strand, within GFF3395 at 218.382 kb on - strand, within GFF3395 at 218.382 kb on - strand, within GFF3395 at 218.462 kb on + strand, within GFF3395 at 218.462 kb on + strand, within GFF3395 at 218.463 kb on - strand, within GFF3395 at 218.477 kb on + strand, within GFF3395 at 218.477 kb on + strand, within GFF3395 at 218.585 kb on + strand at 218.585 kb on + strand at 218.585 kb on + strand at 218.585 kb on + strand at 218.585 kb on + strand at 218.585 kb on + strand at 218.585 kb on + strand at 218.586 kb on - strand at 218.586 kb on - strand at 218.586 kb on - strand at 218.586 kb on - strand at 218.586 kb on - strand at 218.719 kb on + strand at 218.719 kb on + strand at 218.719 kb on + strand at 218.719 kb on + strand at 218.720 kb on - strand at 218.953 kb on + strand, within GFF3396 at 218.953 kb on + strand, within GFF3396 at 219.052 kb on + strand, within GFF3396 at 219.052 kb on + strand, within GFF3396 at 219.053 kb on - strand, within GFF3396 at 219.109 kb on + strand, within GFF3396 at 219.109 kb on + strand, within GFF3396 at 219.110 kb on - strand, within GFF3396 at 219.226 kb on + strand, within GFF3396 at 219.227 kb on - strand, within GFF3396 at 219.263 kb on - strand, within GFF3396 at 219.268 kb on + strand, within GFF3396 at 219.268 kb on + strand, within GFF3396 at 219.268 kb on + strand, within GFF3396 at 219.269 kb on - strand, within GFF3396 at 219.269 kb on - strand, within GFF3396 at 219.295 kb on + strand, within GFF3396 at 219.382 kb on + strand, within GFF3396 at 219.382 kb on + strand, within GFF3396 at 219.382 kb on + strand, within GFF3396 at 219.383 kb on - strand, within GFF3396 at 219.383 kb on - strand, within GFF3396 at 219.383 kb on - strand, within GFF3396 at 219.397 kb on + strand, within GFF3396 at 219.397 kb on + strand, within GFF3396 at 219.397 kb on + strand, within GFF3396 at 219.398 kb on - strand, within GFF3396
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 216,803 + -1.4 216,804 - +0.3 216,804 - -2.5 216,806 + +1.5 216,806 + +0.9 216,806 + -2.9 216,806 + -1.4 216,807 - +0.2 216,807 - +0.1 217,331 - GFF3394 0.66 -2.9 218,054 + GFF3395 0.36 +0.4 218,055 - GFF3395 0.36 -2.1 218,160 - GFF3395 0.47 -0.4 218,189 + GFF3395 0.50 -1.3 218,243 + GFF3395 0.56 +1.4 218,243 + GFF3395 0.56 -0.4 218,243 + GFF3395 0.56 -1.2 218,243 + GFF3395 0.56 -2.0 218,243 + GFF3395 0.56 -1.6 218,243 + GFF3395 0.56 +1.3 218,244 - GFF3395 0.56 +0.5 218,244 - GFF3395 0.56 -3.0 218,244 - GFF3395 0.56 +0.8 218,244 - GFF3395 0.56 +1.0 218,244 - GFF3395 0.56 -0.6 218,244 - GFF3395 0.56 -0.5 218,244 - GFF3395 0.56 -1.8 218,249 + GFF3395 0.57 +2.2 218,249 + GFF3395 0.57 -3.3 218,249 + GFF3395 0.57 -2.2 218,249 + GFF3395 0.57 +1.2 218,250 - GFF3395 0.57 +3.8 218,250 - GFF3395 0.57 +0.6 218,336 + GFF3395 0.66 -1.6 218,336 + GFF3395 0.66 +1.4 218,337 - GFF3395 0.66 -1.7 218,382 - GFF3395 0.71 -1.4 218,382 - GFF3395 0.71 +1.1 218,382 - GFF3395 0.71 +0.3 218,462 + GFF3395 0.79 -1.5 218,462 + GFF3395 0.79 +0.7 218,463 - GFF3395 0.79 -0.4 218,477 + GFF3395 0.81 +0.9 218,477 + GFF3395 0.81 -3.1 218,585 + -3.0 218,585 + +1.6 218,585 + +1.3 218,585 + -2.1 218,585 + -2.5 218,585 + -2.0 218,585 + -0.8 218,586 - -0.2 218,586 - -1.3 218,586 - -0.7 218,586 - +0.7 218,586 - -0.5 218,719 + -2.1 218,719 + -3.7 218,719 + -1.3 218,719 + -1.8 218,720 - +1.1 218,953 + GFF3396 0.34 -0.1 218,953 + GFF3396 0.34 -0.4 219,052 + GFF3396 0.45 -1.6 219,052 + GFF3396 0.45 +0.8 219,053 - GFF3396 0.45 -3.1 219,109 + GFF3396 0.52 -0.4 219,109 + GFF3396 0.52 +1.3 219,110 - GFF3396 0.52 -0.2 219,226 + GFF3396 0.65 -1.9 219,227 - GFF3396 0.65 -0.8 219,263 - GFF3396 0.69 +0.7 219,268 + GFF3396 0.70 +0.1 219,268 + GFF3396 0.70 +0.1 219,268 + GFF3396 0.70 +0.1 219,269 - GFF3396 0.70 -1.7 219,269 - GFF3396 0.70 -1.4 219,295 + GFF3396 0.73 +1.2 219,382 + GFF3396 0.83 +0.2 219,382 + GFF3396 0.83 -1.9 219,382 + GFF3396 0.83 -1.4 219,383 - GFF3396 0.83 +0.1 219,383 - GFF3396 0.83 +0.8 219,383 - GFF3396 0.83 -1.2 219,397 + GFF3396 0.85 -0.2 219,397 + GFF3396 0.85 +0.7 219,397 + GFF3396 0.85 -0.6 219,398 - GFF3396 0.85 -1.8
Or see this region's nucleotide sequence