Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3392 and GFF3393 are separated by 31 nucleotides GFF3393 and GFF3394 overlap by 1 nucleotides GFF3394 and GFF3395 are separated by 127 nucleotides
GFF3392 - Transcriptional regulator, AraC family, at 215,223 to 216,101
GFF3392
GFF3393 - Benzoate ABC transporter, ATP-binding protein 2, at 216,133 to 216,834
GFF3393
GFF3394 - Benzoate ABC transporter, ATP-binding protein 1, at 216,834 to 217,583
GFF3394
GFF3395 - Benzoate ABC transporter, permease protein 2, at 217,711 to 218,661
GFF3395
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 215.953 kb on + strand, within GFF3392 at 215.953 kb on + strand, within GFF3392 at 215.953 kb on + strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 216.134 kb on + strand at 216.134 kb on + strand at 216.596 kb on + strand, within GFF3393 at 216.596 kb on + strand, within GFF3393 at 216.597 kb on - strand, within GFF3393 at 216.686 kb on + strand, within GFF3393 at 216.686 kb on + strand, within GFF3393 at 216.687 kb on - strand, within GFF3393 at 216.687 kb on - strand, within GFF3393 at 216.803 kb on + strand at 216.804 kb on - strand at 216.804 kb on - strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.807 kb on - strand at 216.807 kb on - strand at 217.331 kb on - strand, within GFF3394 at 218.054 kb on + strand, within GFF3395 at 218.055 kb on - strand, within GFF3395 at 218.160 kb on - strand, within GFF3395 at 218.189 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.243 kb on + strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.244 kb on - strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.249 kb on + strand, within GFF3395 at 218.250 kb on - strand, within GFF3395 at 218.250 kb on - strand, within GFF3395 at 218.336 kb on + strand, within GFF3395 at 218.336 kb on + strand, within GFF3395 at 218.337 kb on - strand, within GFF3395 at 218.382 kb on - strand, within GFF3395 at 218.382 kb on - strand, within GFF3395 at 218.382 kb on - strand, within GFF3395 at 218.462 kb on + strand, within GFF3395 at 218.462 kb on + strand, within GFF3395 at 218.463 kb on - strand, within GFF3395 at 218.477 kb on + strand, within GFF3395 at 218.477 kb on + strand, within GFF3395
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 215,953 + GFF3392 0.83 -1.2 215,953 + GFF3392 0.83 +0.3 215,953 + GFF3392 0.83 -1.1 215,954 - GFF3392 0.83 -2.1 215,954 - GFF3392 0.83 +1.0 215,954 - GFF3392 0.83 +0.8 215,954 - GFF3392 0.83 +1.7 216,134 + -2.1 216,134 + +0.1 216,596 + GFF3393 0.66 +1.4 216,596 + GFF3393 0.66 +1.4 216,597 - GFF3393 0.66 +1.4 216,686 + GFF3393 0.79 +2.8 216,686 + GFF3393 0.79 -1.7 216,687 - GFF3393 0.79 -0.4 216,687 - GFF3393 0.79 -0.3 216,803 + -1.4 216,804 - +0.3 216,804 - -2.5 216,806 + +1.5 216,806 + +0.9 216,806 + -2.9 216,806 + -1.4 216,807 - +0.2 216,807 - +0.1 217,331 - GFF3394 0.66 -2.9 218,054 + GFF3395 0.36 +0.4 218,055 - GFF3395 0.36 -2.1 218,160 - GFF3395 0.47 -0.4 218,189 + GFF3395 0.50 -1.3 218,243 + GFF3395 0.56 +1.4 218,243 + GFF3395 0.56 -0.4 218,243 + GFF3395 0.56 -1.2 218,243 + GFF3395 0.56 -2.0 218,243 + GFF3395 0.56 -1.6 218,243 + GFF3395 0.56 +1.3 218,244 - GFF3395 0.56 +0.5 218,244 - GFF3395 0.56 -3.0 218,244 - GFF3395 0.56 +0.8 218,244 - GFF3395 0.56 +1.0 218,244 - GFF3395 0.56 -0.6 218,244 - GFF3395 0.56 -0.5 218,244 - GFF3395 0.56 -1.8 218,249 + GFF3395 0.57 +2.2 218,249 + GFF3395 0.57 -3.3 218,249 + GFF3395 0.57 -2.2 218,249 + GFF3395 0.57 +1.2 218,250 - GFF3395 0.57 +3.8 218,250 - GFF3395 0.57 +0.6 218,336 + GFF3395 0.66 -1.6 218,336 + GFF3395 0.66 +1.4 218,337 - GFF3395 0.66 -1.7 218,382 - GFF3395 0.71 -1.4 218,382 - GFF3395 0.71 +1.1 218,382 - GFF3395 0.71 +0.3 218,462 + GFF3395 0.79 -1.5 218,462 + GFF3395 0.79 +0.7 218,463 - GFF3395 0.79 -0.4 218,477 + GFF3395 0.81 +0.9 218,477 + GFF3395 0.81 -3.1
Or see this region's nucleotide sequence