Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3392 and GFF3393 are separated by 31 nucleotides GFF3393 and GFF3394 overlap by 1 nucleotides GFF3394 and GFF3395 are separated by 127 nucleotides
GFF3392 - Transcriptional regulator, AraC family, at 215,223 to 216,101
GFF3392
GFF3393 - Benzoate ABC transporter, ATP-binding protein 2, at 216,133 to 216,834
GFF3393
GFF3394 - Benzoate ABC transporter, ATP-binding protein 1, at 216,834 to 217,583
GFF3394
GFF3395 - Benzoate ABC transporter, permease protein 2, at 217,711 to 218,661
GFF3395
Position (kb) 216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 215.137 kb on - strand at 215.137 kb on - strand at 215.137 kb on - strand at 215.137 kb on - strand at 215.171 kb on + strand at 215.383 kb on + strand, within GFF3392 at 215.383 kb on + strand, within GFF3392 at 215.384 kb on - strand, within GFF3392 at 215.509 kb on + strand, within GFF3392 at 215.509 kb on + strand, within GFF3392 at 215.509 kb on + strand, within GFF3392 at 215.509 kb on + strand, within GFF3392 at 215.510 kb on - strand, within GFF3392 at 215.510 kb on - strand, within GFF3392 at 215.510 kb on - strand, within GFF3392 at 215.510 kb on - strand, within GFF3392 at 215.510 kb on - strand, within GFF3392 at 215.590 kb on + strand, within GFF3392 at 215.590 kb on + strand, within GFF3392 at 215.590 kb on + strand, within GFF3392 at 215.591 kb on - strand, within GFF3392 at 215.823 kb on + strand, within GFF3392 at 215.824 kb on - strand, within GFF3392 at 215.830 kb on + strand, within GFF3392 at 215.953 kb on + strand, within GFF3392 at 215.953 kb on + strand, within GFF3392 at 215.953 kb on + strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 216.134 kb on + strand at 216.134 kb on + strand at 216.596 kb on + strand, within GFF3393 at 216.596 kb on + strand, within GFF3393 at 216.597 kb on - strand, within GFF3393 at 216.686 kb on + strand, within GFF3393 at 216.686 kb on + strand, within GFF3393 at 216.687 kb on - strand, within GFF3393 at 216.687 kb on - strand, within GFF3393 at 216.803 kb on + strand at 216.804 kb on - strand at 216.804 kb on - strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.807 kb on - strand at 216.807 kb on - strand at 217.331 kb on - strand, within GFF3394
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 215,137 - -1.3 215,137 - -1.9 215,137 - -0.7 215,137 - -0.2 215,171 + -2.3 215,383 + GFF3392 0.18 -0.9 215,383 + GFF3392 0.18 -0.5 215,384 - GFF3392 0.18 +0.3 215,509 + GFF3392 0.33 -1.5 215,509 + GFF3392 0.33 +0.2 215,509 + GFF3392 0.33 -2.8 215,509 + GFF3392 0.33 +1.2 215,510 - GFF3392 0.33 -2.3 215,510 - GFF3392 0.33 +0.7 215,510 - GFF3392 0.33 -0.8 215,510 - GFF3392 0.33 +0.5 215,510 - GFF3392 0.33 -0.6 215,590 + GFF3392 0.42 +1.2 215,590 + GFF3392 0.42 +1.1 215,590 + GFF3392 0.42 -2.7 215,591 - GFF3392 0.42 +0.5 215,823 + GFF3392 0.68 -1.3 215,824 - GFF3392 0.68 -1.8 215,830 + GFF3392 0.69 +0.1 215,953 + GFF3392 0.83 -1.2 215,953 + GFF3392 0.83 +0.3 215,953 + GFF3392 0.83 -1.1 215,954 - GFF3392 0.83 -2.1 215,954 - GFF3392 0.83 +1.0 215,954 - GFF3392 0.83 +0.8 215,954 - GFF3392 0.83 +1.7 216,134 + -2.1 216,134 + +0.1 216,596 + GFF3393 0.66 +1.4 216,596 + GFF3393 0.66 +1.4 216,597 - GFF3393 0.66 +1.4 216,686 + GFF3393 0.79 +2.8 216,686 + GFF3393 0.79 -1.7 216,687 - GFF3393 0.79 -0.4 216,687 - GFF3393 0.79 -0.3 216,803 + -1.4 216,804 - +0.3 216,804 - -2.5 216,806 + +1.5 216,806 + +0.9 216,806 + -2.9 216,806 + -1.4 216,807 - +0.2 216,807 - +0.1 217,331 - GFF3394 0.66 -2.9
Or see this region's nucleotide sequence