Strain Fitness in Variovorax sp. SCN45 around GFF3385

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3383 and GFF3384 are separated by 34 nucleotidesGFF3384 and GFF3385 are separated by 9 nucleotidesGFF3385 and GFF3386 are separated by 371 nucleotides GFF3383 - no description, at 204,299 to 204,682 GFF3383 GFF3384 - Transcriptional regulator, Crp/Fnr family, at 204,717 to 205,427 GFF3384 GFF3385 - Flavin-containing monooxygenase, at 205,437 to 207,248 GFF3385 GFF3386 - hypothetical protein, at 207,620 to 209,011 GFF3386 Position (kb) 205 206 207 208Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 204.680 kb on + strandat 204.681 kb on - strandat 205.171 kb on - strand, within GFF3384at 205.171 kb on - strand, within GFF3384at 205.468 kb on + strandat 205.469 kb on - strandat 205.469 kb on - strandat 205.528 kb on + strandat 205.528 kb on + strandat 205.735 kb on + strand, within GFF3385at 205.735 kb on + strand, within GFF3385at 205.736 kb on - strand, within GFF3385at 205.736 kb on - strand, within GFF3385at 205.870 kb on + strand, within GFF3385at 205.870 kb on + strand, within GFF3385at 205.870 kb on + strand, within GFF3385at 205.870 kb on + strand, within GFF3385at 205.870 kb on + strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.871 kb on - strand, within GFF3385at 205.874 kb on - strand, within GFF3385at 205.894 kb on + strand, within GFF3385at 205.895 kb on - strand, within GFF3385at 205.895 kb on - strand, within GFF3385at 205.895 kb on - strand, within GFF3385at 205.963 kb on + strand, within GFF3385at 205.963 kb on + strand, within GFF3385at 205.964 kb on - strand, within GFF3385at 205.996 kb on + strand, within GFF3385at 205.997 kb on - strand, within GFF3385at 205.997 kb on - strand, within GFF3385at 206.029 kb on + strand, within GFF3385at 206.029 kb on + strand, within GFF3385at 206.029 kb on + strand, within GFF3385at 206.029 kb on + strand, within GFF3385at 206.030 kb on - strand, within GFF3385at 206.476 kb on + strand, within GFF3385at 206.477 kb on - strand, within GFF3385at 206.477 kb on - strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.500 kb on + strand, within GFF3385at 206.501 kb on - strand, within GFF3385at 206.501 kb on - strand, within GFF3385at 206.501 kb on - strand, within GFF3385at 206.501 kb on - strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.569 kb on + strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.570 kb on - strand, within GFF3385at 206.584 kb on + strand, within GFF3385at 206.585 kb on - strand, within GFF3385at 206.617 kb on + strand, within GFF3385at 206.755 kb on + strand, within GFF3385at 206.755 kb on + strand, within GFF3385at 206.755 kb on + strand, within GFF3385at 206.960 kb on + strand, within GFF3385at 207.446 kb on + strandat 207.447 kb on - strandat 207.460 kb on + strandat 207.460 kb on + strandat 207.461 kb on - strandat 207.461 kb on - strandat 207.461 kb on - strandat 207.530 kb on - strandat 207.538 kb on - strandat 207.554 kb on + strandat 207.595 kb on + strandat 207.595 kb on + strandat 207.595 kb on + strandat 207.595 kb on + strandat 207.596 kb on - strandat 207.833 kb on + strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.964 kb on + strand, within GFF3386at 207.964 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.996 kb on - strand, within GFF3386at 208.080 kb on - strand, within GFF3386at 208.142 kb on + strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.209 kb on - strand, within GFF3386at 208.209 kb on - strand, within GFF3386at 208.209 kb on - strand, within GFF3386

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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204,680 + -1.1
204,681 - -0.9
205,171 - GFF3384 0.64 +1.2
205,171 - GFF3384 0.64 -2.4
205,468 + -0.5
205,469 - -3.8
205,469 - +0.9
205,528 + -0.5
205,528 + -3.0
205,735 + GFF3385 0.16 -3.2
205,735 + GFF3385 0.16 -1.2
205,736 - GFF3385 0.17 -0.9
205,736 - GFF3385 0.17 +2.4
205,870 + GFF3385 0.24 +0.2
205,870 + GFF3385 0.24 -0.2
205,870 + GFF3385 0.24 +0.1
205,870 + GFF3385 0.24 -0.1
205,870 + GFF3385 0.24 +1.5
205,871 - GFF3385 0.24 -1.5
205,871 - GFF3385 0.24 +0.9
205,871 - GFF3385 0.24 +0.8
205,871 - GFF3385 0.24 -1.3
205,871 - GFF3385 0.24 -0.2
205,871 - GFF3385 0.24 -2.1
205,874 - GFF3385 0.24 -2.2
205,894 + GFF3385 0.25 -0.5
205,895 - GFF3385 0.25 -0.1
205,895 - GFF3385 0.25 +1.3
205,895 - GFF3385 0.25 -2.3
205,963 + GFF3385 0.29 +0.4
205,963 + GFF3385 0.29 +0.5
205,964 - GFF3385 0.29 -1.2
205,996 + GFF3385 0.31 -1.1
205,997 - GFF3385 0.31 +1.0
205,997 - GFF3385 0.31 -2.5
206,029 + GFF3385 0.33 -1.3
206,029 + GFF3385 0.33 +0.4
206,029 + GFF3385 0.33 +1.6
206,029 + GFF3385 0.33 +1.1
206,030 - GFF3385 0.33 -1.2
206,476 + GFF3385 0.57 -0.2
206,477 - GFF3385 0.57 +0.1
206,477 - GFF3385 0.57 -1.8
206,500 + GFF3385 0.59 -1.6
206,500 + GFF3385 0.59 -0.9
206,500 + GFF3385 0.59 +1.8
206,500 + GFF3385 0.59 +1.1
206,500 + GFF3385 0.59 -1.4
206,500 + GFF3385 0.59 +1.5
206,500 + GFF3385 0.59 +1.2
206,500 + GFF3385 0.59 -0.4
206,501 - GFF3385 0.59 +0.8
206,501 - GFF3385 0.59 -0.2
206,501 - GFF3385 0.59 +1.0
206,501 - GFF3385 0.59 +0.3
206,569 + GFF3385 0.62 -3.2
206,569 + GFF3385 0.62 -2.1
206,569 + GFF3385 0.62 -2.3
206,569 + GFF3385 0.62 -2.3
206,569 + GFF3385 0.62 -0.4
206,569 + GFF3385 0.62 -0.6
206,569 + GFF3385 0.62 +1.1
206,570 - GFF3385 0.63 -1.8
206,570 - GFF3385 0.63 +1.8
206,570 - GFF3385 0.63 -0.5
206,570 - GFF3385 0.63 -0.7
206,570 - GFF3385 0.63 -1.9
206,570 - GFF3385 0.63 -1.2
206,584 + GFF3385 0.63 +2.2
206,585 - GFF3385 0.63 +0.1
206,617 + GFF3385 0.65 +1.3
206,755 + GFF3385 0.73 +0.6
206,755 + GFF3385 0.73 +0.5
206,755 + GFF3385 0.73 +0.9
206,960 + GFF3385 0.84 +0.7
207,446 + +0.7
207,447 - -0.2
207,460 + -1.9
207,460 + +1.5
207,461 - -1.2
207,461 - +0.3
207,461 - +2.6
207,530 - -0.8
207,538 - -0.8
207,554 + -0.0
207,595 + -1.3
207,595 + -0.7
207,595 + -1.6
207,595 + -2.9
207,596 - +0.4
207,833 + GFF3386 0.15 +2.4
207,834 - GFF3386 0.15 -3.1
207,834 - GFF3386 0.15 -0.4
207,834 - GFF3386 0.15 -0.1
207,834 - GFF3386 0.15 +3.3
207,964 + GFF3386 0.25 +2.4
207,964 + GFF3386 0.25 -1.1
207,995 + GFF3386 0.27 -1.6
207,995 + GFF3386 0.27 +2.2
207,995 + GFF3386 0.27 +0.3
207,995 + GFF3386 0.27 -2.7
207,995 + GFF3386 0.27 +0.2
207,995 + GFF3386 0.27 +0.3
207,995 + GFF3386 0.27 +2.4
207,996 - GFF3386 0.27 -0.9
208,080 - GFF3386 0.33 -2.1
208,142 + GFF3386 0.38 -1.3
208,143 - GFF3386 0.38 +1.2
208,143 - GFF3386 0.38 -1.5
208,143 - GFF3386 0.38 +0.4
208,143 - GFF3386 0.38 +0.1
208,143 - GFF3386 0.38 +0.3
208,208 + GFF3386 0.42 -1.2
208,208 + GFF3386 0.42 -1.2
208,208 + GFF3386 0.42 -0.4
208,208 + GFF3386 0.42 +1.4
208,208 + GFF3386 0.42 -1.5
208,208 + GFF3386 0.42 -1.8
208,208 + GFF3386 0.42 +1.5
208,209 - GFF3386 0.42 +2.6
208,209 - GFF3386 0.42 -1.6
208,209 - GFF3386 0.42 +0.6

Or see this region's nucleotide sequence