Strain Fitness in Variovorax sp. SCN45 around GFF3363

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3362 and GFF3363 are separated by 151 nucleotidesGFF3363 and GFF3364 are separated by 98 nucleotides GFF3362 - Fatty acid desaturase, at 181,927 to 182,868 GFF3362 GFF3363 - BUG/TctC family periplasmic protein, at 183,020 to 184,000 GFF3363 GFF3364 - Rhodanese-related sulfurtransferase, at 184,099 to 185,724 GFF3364 Position (kb) 183 184 185Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 182.051 kb on + strand, within GFF3362at 182.120 kb on + strand, within GFF3362at 182.120 kb on + strand, within GFF3362at 182.120 kb on + strand, within GFF3362at 182.120 kb on + strand, within GFF3362at 182.121 kb on - strand, within GFF3362at 182.121 kb on - strand, within GFF3362at 182.121 kb on - strand, within GFF3362at 182.231 kb on + strand, within GFF3362at 182.240 kb on + strand, within GFF3362at 182.240 kb on + strand, within GFF3362at 182.250 kb on - strand, within GFF3362at 182.285 kb on + strand, within GFF3362at 182.285 kb on + strand, within GFF3362at 182.285 kb on + strand, within GFF3362at 182.286 kb on - strand, within GFF3362at 182.286 kb on - strand, within GFF3362at 182.286 kb on - strand, within GFF3362at 182.288 kb on + strand, within GFF3362at 182.288 kb on + strand, within GFF3362at 182.289 kb on - strand, within GFF3362at 182.289 kb on - strand, within GFF3362at 182.289 kb on - strand, within GFF3362at 182.289 kb on - strand, within GFF3362at 182.444 kb on + strand, within GFF3362at 182.444 kb on + strand, within GFF3362at 182.444 kb on + strand, within GFF3362at 182.444 kb on + strand, within GFF3362at 182.444 kb on + strand, within GFF3362at 182.445 kb on - strand, within GFF3362at 182.445 kb on - strand, within GFF3362at 182.445 kb on - strand, within GFF3362at 182.495 kb on + strand, within GFF3362at 182.534 kb on + strand, within GFF3362at 182.534 kb on + strand, within GFF3362at 182.535 kb on - strand, within GFF3362at 182.535 kb on - strand, within GFF3362at 182.567 kb on + strand, within GFF3362at 182.567 kb on + strand, within GFF3362at 182.762 kb on + strand, within GFF3362at 182.798 kb on + strandat 182.799 kb on - strandat 182.889 kb on + strandat 182.889 kb on + strandat 182.889 kb on + strandat 182.889 kb on + strandat 182.889 kb on + strandat 182.890 kb on - strandat 182.890 kb on - strandat 182.927 kb on + strandat 182.928 kb on - strandat 182.972 kb on + strandat 182.972 kb on + strandat 182.973 kb on - strandat 182.973 kb on - strandat 182.973 kb on - strandat 182.973 kb on - strandat 183.107 kb on + strandat 183.263 kb on + strand, within GFF3363at 183.290 kb on + strand, within GFF3363at 183.290 kb on + strand, within GFF3363at 183.356 kb on - strand, within GFF3363at 183.357 kb on - strand, within GFF3363at 183.357 kb on - strand, within GFF3363at 183.357 kb on - strand, within GFF3363at 183.494 kb on + strand, within GFF3363at 183.494 kb on + strand, within GFF3363at 183.494 kb on + strand, within GFF3363at 183.495 kb on - strand, within GFF3363at 183.515 kb on + strand, within GFF3363at 183.701 kb on + strand, within GFF3363at 183.701 kb on + strand, within GFF3363at 183.701 kb on + strand, within GFF3363at 183.701 kb on + strand, within GFF3363at 183.702 kb on - strand, within GFF3363at 183.783 kb on - strand, within GFF3363at 183.881 kb on + strand, within GFF3363at 184.005 kb on + strandat 184.006 kb on - strandat 184.190 kb on - strandat 184.253 kb on + strandat 184.253 kb on + strandat 184.254 kb on - strandat 184.254 kb on - strandat 184.254 kb on - strandat 184.294 kb on + strand, within GFF3364at 184.294 kb on + strand, within GFF3364at 184.360 kb on + strand, within GFF3364at 184.360 kb on + strand, within GFF3364at 184.361 kb on - strand, within GFF3364at 184.361 kb on - strand, within GFF3364at 184.477 kb on + strand, within GFF3364at 184.942 kb on + strand, within GFF3364at 184.942 kb on + strand, within GFF3364at 184.942 kb on + strand, within GFF3364at 184.942 kb on + strand, within GFF3364at 184.942 kb on + strand, within GFF3364at 184.943 kb on - strand, within GFF3364at 184.943 kb on - strand, within GFF3364at 184.943 kb on - strand, within GFF3364

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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182,051 + GFF3362 0.13 -1.4
182,120 + GFF3362 0.20 +3.4
182,120 + GFF3362 0.20 -0.9
182,120 + GFF3362 0.20 +0.1
182,120 + GFF3362 0.20 -2.3
182,121 - GFF3362 0.21 -0.9
182,121 - GFF3362 0.21 -1.2
182,121 - GFF3362 0.21 +0.2
182,231 + GFF3362 0.32 +1.2
182,240 + GFF3362 0.33 -3.2
182,240 + GFF3362 0.33 +0.5
182,250 - GFF3362 0.34 +0.1
182,285 + GFF3362 0.38 -2.5
182,285 + GFF3362 0.38 +0.8
182,285 + GFF3362 0.38 -1.7
182,286 - GFF3362 0.38 -0.4
182,286 - GFF3362 0.38 -1.3
182,286 - GFF3362 0.38 +0.9
182,288 + GFF3362 0.38 -1.9
182,288 + GFF3362 0.38 -0.7
182,289 - GFF3362 0.38 +0.2
182,289 - GFF3362 0.38 +0.7
182,289 - GFF3362 0.38 +0.7
182,289 - GFF3362 0.38 -0.6
182,444 + GFF3362 0.55 -0.9
182,444 + GFF3362 0.55 +0.5
182,444 + GFF3362 0.55 +0.4
182,444 + GFF3362 0.55 +0.5
182,444 + GFF3362 0.55 -3.3
182,445 - GFF3362 0.55 -0.4
182,445 - GFF3362 0.55 +3.1
182,445 - GFF3362 0.55 -0.9
182,495 + GFF3362 0.60 +1.5
182,534 + GFF3362 0.64 +0.3
182,534 + GFF3362 0.64 +0.6
182,535 - GFF3362 0.65 +0.4
182,535 - GFF3362 0.65 +1.4
182,567 + GFF3362 0.68 +1.0
182,567 + GFF3362 0.68 -0.5
182,762 + GFF3362 0.89 +1.9
182,798 + +0.4
182,799 - +1.1
182,889 + -0.8
182,889 + -1.2
182,889 + -0.6
182,889 + -0.4
182,889 + +0.4
182,890 - -0.1
182,890 - -0.9
182,927 + +0.6
182,928 - +1.2
182,972 + +1.4
182,972 + -1.6
182,973 - -4.0
182,973 - +0.8
182,973 - -0.9
182,973 - -0.6
183,107 + +2.4
183,263 + GFF3363 0.25 -0.8
183,290 + GFF3363 0.28 -2.0
183,290 + GFF3363 0.28 +2.4
183,356 - GFF3363 0.34 -0.4
183,357 - GFF3363 0.34 -0.1
183,357 - GFF3363 0.34 +1.1
183,357 - GFF3363 0.34 -1.0
183,494 + GFF3363 0.48 +1.8
183,494 + GFF3363 0.48 -0.3
183,494 + GFF3363 0.48 +0.5
183,495 - GFF3363 0.48 -2.4
183,515 + GFF3363 0.50 -2.0
183,701 + GFF3363 0.69 -0.6
183,701 + GFF3363 0.69 -1.2
183,701 + GFF3363 0.69 -0.2
183,701 + GFF3363 0.69 -0.8
183,702 - GFF3363 0.70 -0.2
183,783 - GFF3363 0.78 -2.9
183,881 + GFF3363 0.88 -1.5
184,005 + -0.9
184,006 - +0.6
184,190 - +0.8
184,253 + +2.3
184,253 + -2.0
184,254 - -0.9
184,254 - -0.8
184,254 - -2.0
184,294 + GFF3364 0.12 -1.1
184,294 + GFF3364 0.12 -0.1
184,360 + GFF3364 0.16 -1.2
184,360 + GFF3364 0.16 -0.2
184,361 - GFF3364 0.16 +2.7
184,361 - GFF3364 0.16 -1.0
184,477 + GFF3364 0.23 +0.9
184,942 + GFF3364 0.52 -0.4
184,942 + GFF3364 0.52 -3.6
184,942 + GFF3364 0.52 +1.0
184,942 + GFF3364 0.52 +0.4
184,942 + GFF3364 0.52 +0.6
184,943 - GFF3364 0.52 +1.8
184,943 - GFF3364 0.52 +1.5
184,943 - GFF3364 0.52 -0.6

Or see this region's nucleotide sequence