Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3358 and GFF3359 are separated by 177 nucleotides GFF3359 and GFF3360 are separated by 81 nucleotides GFF3360 and GFF3361 are separated by 22 nucleotides
GFF3358 - Alkanesulfonate utilization operon LysR-family regulator Cbl, at 179,049 to 179,993
GFF3358
GFF3359 - Predicted transcriptional regulator for fatty acid degradation FadP, TetR family, at 180,171 to 180,773
GFF3359
GFF3360 - no description, at 180,855 to 180,968
GFF3360
GFF3361 - Hydrolase, at 180,991 to 181,917
GFF3361
Position (kb) 180
181 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 179.255 kb on - strand, within GFF3358 at 179.255 kb on - strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.299 kb on + strand, within GFF3358 at 179.300 kb on - strand, within GFF3358 at 179.300 kb on - strand, within GFF3358 at 179.407 kb on + strand, within GFF3358 at 179.407 kb on + strand, within GFF3358 at 179.408 kb on - strand, within GFF3358 at 180.057 kb on - strand at 180.363 kb on + strand, within GFF3359 at 180.363 kb on + strand, within GFF3359 at 180.364 kb on - strand, within GFF3359 at 180.495 kb on + strand, within GFF3359 at 180.495 kb on + strand, within GFF3359 at 180.495 kb on + strand, within GFF3359 at 180.496 kb on - strand, within GFF3359 at 180.496 kb on - strand, within GFF3359 at 180.496 kb on - strand, within GFF3359 at 180.496 kb on - strand, within GFF3359 at 180.496 kb on - strand, within GFF3359 at 180.762 kb on + strand at 180.885 kb on + strand, within GFF3360 at 180.885 kb on + strand, within GFF3360 at 181.045 kb on + strand at 181.045 kb on + strand at 181.045 kb on + strand at 181.046 kb on - strand at 181.046 kb on - strand at 181.046 kb on - strand at 181.136 kb on - strand, within GFF3361 at 181.174 kb on + strand, within GFF3361 at 181.174 kb on + strand, within GFF3361 at 181.246 kb on + strand, within GFF3361 at 181.246 kb on + strand, within GFF3361 at 181.247 kb on - strand, within GFF3361 at 181.247 kb on - strand, within GFF3361 at 181.247 kb on - strand, within GFF3361 at 181.247 kb on - strand, within GFF3361 at 181.247 kb on - strand, within GFF3361 at 181.247 kb on - strand, within GFF3361 at 181.247 kb on - strand, within GFF3361 at 181.369 kb on - strand, within GFF3361 at 181.453 kb on + strand, within GFF3361 at 181.453 kb on + strand, within GFF3361 at 181.454 kb on - strand, within GFF3361 at 181.454 kb on - strand, within GFF3361 at 181.454 kb on - strand, within GFF3361 at 181.454 kb on - strand, within GFF3361 at 181.603 kb on + strand, within GFF3361 at 181.612 kb on + strand, within GFF3361
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 179,255 - GFF3358 0.22 -1.8 179,255 - GFF3358 0.22 +0.6 179,299 + GFF3358 0.26 -0.1 179,299 + GFF3358 0.26 +0.2 179,299 + GFF3358 0.26 +3.1 179,299 + GFF3358 0.26 -1.7 179,299 + GFF3358 0.26 +2.0 179,299 + GFF3358 0.26 +0.7 179,300 - GFF3358 0.27 -2.2 179,300 - GFF3358 0.27 -0.7 179,407 + GFF3358 0.38 -1.0 179,407 + GFF3358 0.38 +2.2 179,408 - GFF3358 0.38 -1.5 180,057 - +1.1 180,363 + GFF3359 0.32 -1.2 180,363 + GFF3359 0.32 -0.4 180,364 - GFF3359 0.32 -1.9 180,495 + GFF3359 0.54 -0.6 180,495 + GFF3359 0.54 -1.8 180,495 + GFF3359 0.54 +0.4 180,496 - GFF3359 0.54 +2.1 180,496 - GFF3359 0.54 -1.5 180,496 - GFF3359 0.54 -3.5 180,496 - GFF3359 0.54 +0.7 180,496 - GFF3359 0.54 -0.3 180,762 + +0.8 180,885 + GFF3360 0.26 -2.1 180,885 + GFF3360 0.26 -2.9 181,045 + -0.9 181,045 + +1.0 181,045 + -2.4 181,046 - -1.3 181,046 - -1.8 181,046 - -1.8 181,136 - GFF3361 0.16 -1.2 181,174 + GFF3361 0.20 -1.9 181,174 + GFF3361 0.20 -3.2 181,246 + GFF3361 0.28 -0.9 181,246 + GFF3361 0.28 -1.7 181,247 - GFF3361 0.28 +1.7 181,247 - GFF3361 0.28 -0.2 181,247 - GFF3361 0.28 -2.1 181,247 - GFF3361 0.28 +0.7 181,247 - GFF3361 0.28 -1.8 181,247 - GFF3361 0.28 +1.4 181,247 - GFF3361 0.28 +0.1 181,369 - GFF3361 0.41 +0.2 181,453 + GFF3361 0.50 +1.4 181,453 + GFF3361 0.50 -1.9 181,454 - GFF3361 0.50 +0.8 181,454 - GFF3361 0.50 -2.8 181,454 - GFF3361 0.50 +0.4 181,454 - GFF3361 0.50 -2.0 181,603 + GFF3361 0.66 -4.6 181,612 + GFF3361 0.67 -0.8
Or see this region's nucleotide sequence