Strain Fitness in Variovorax sp. SCN45 around GFF3314

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
140,621	+		GFF3313	0.60	-1.4
140,621	+		GFF3313	0.60	-3.5
140,621	+		GFF3313	0.60	-1.7
140,621	+		GFF3313	0.60	-1.9
140,621	+		GFF3313	0.60	-0.8
140,621	+		GFF3313	0.60	-0.1
140,621	+		GFF3313	0.60	+1.2
140,621	+		GFF3313	0.60	-0.2
140,622	-		GFF3313	0.60	-0.2
140,622	-		GFF3313	0.60	+0.6
140,622	-		GFF3313	0.60	+2.1
140,622	-		GFF3313	0.60	+0.3
140,622	-		GFF3313	0.60	-0.4
140,622	-		GFF3313	0.60	-0.5
140,622	-		GFF3313	0.60	-0.9
140,622	-		GFF3313	0.60	-1.9
140,622	-		GFF3313	0.60	-0.7
140,622	-		GFF3313	0.60	-3.2
140,622	-		GFF3313	0.60	-0.2
140,622	-		GFF3313	0.60	+0.9
140,622	-		GFF3313	0.60	-1.4
140,622	-		GFF3313	0.60	-0.9
140,622	-		GFF3313	0.60	+0.7
140,659	+		GFF3313	0.65	-0.2
140,659	+		GFF3313	0.65	+1.0
140,659	+		GFF3313	0.65	-2.1
140,659	+		GFF3313	0.65	+3.1
140,659	+		GFF3313	0.65	-0.9
140,660	-		GFF3313	0.65	-2.4
140,660	-		GFF3313	0.65	+1.4
140,660	-		GFF3313	0.65	-0.3
140,660	-		GFF3313	0.65	-0.9
140,660	-		GFF3313	0.65	-0.6
140,876	+				+1.1
140,876	+				+0.4
140,876	+				+1.6
140,876	+				-2.5
140,876	+				-0.8
140,876	+				+0.5
140,876	+				-0.2
140,876	+				+0.1
140,876	+				-0.8
140,876	+				+1.4
140,876	+				-0.7
140,876	+				-0.5
140,876	+				+1.3
140,876	+				-0.2
140,876	+				-0.9
140,876	+				+0.6
140,876	+				+0.2
140,876	+				+0.3
140,876	+				-0.9
140,877	-				+0.4
140,877	-				+1.2
140,877	-				+0.6
140,877	-				+1.4
140,877	-				-1.4
140,877	-				-0.5
140,877	-				+0.5
140,877	-				-0.8
140,877	-				+0.8
140,877	-				-0.1
140,877	-				-1.3
140,877	-				-0.6
140,877	-				-2.6
140,877	-				+0.3
140,877	-				-0.7
140,877	-				+0.3
140,877	-				-0.3
140,877	-				+1.0
140,877	-				-1.1
140,877	-				-0.2
140,877	-				+1.1
140,877	-				-0.7
140,877	-				+0.1
140,877	-				+0.3
140,877	-				+0.4
140,877	-				-0.6
141,058	+				-0.9
141,062	+				+0.6
141,063	-				-1.3
141,063	-				+0.7
141,063	-				+0.4
141,063	-				+1.9
141,063	-				-1.9
141,063	-				-0.4
141,071	+				+2.4
141,072	-				-1.5
141,080	+				+0.6
141,080	+				-0.8
141,080	+				-2.4
141,080	+				-1.0
141,080	+				+0.8
141,080	+				+1.3
141,081	-				+0.2
141,081	-				-1.8
141,081	-				-1.3
141,081	-				-1.1
141,081	-				-0.3
141,081	-				+0.7
141,081	-				-0.6
141,081	-				+0.6
141,081	-				+0.6
141,083	+				+0.8
141,083	+				+0.8
141,083	+				-0.4
141,083	+				-1.8
141,084	-				-1.3
141,084	-				-1.9
141,084	-				+0.4
141,084	-				-1.8
141,085	-				-0.1
141,086	+				+1.6
141,086	+				+1.8
141,086	+				-2.4
141,086	+				-0.9
141,086	+				-1.1
141,086	+				+0.1
141,086	+				-2.8
141,086	+				-1.5
141,086	+				-0.4
141,087	-				-1.9
141,087	-				-1.9
141,087	-				+2.4
141,087	-				-1.1
141,087	-				-0.4
141,089	+				+0.1
141,089	+				+2.1
141,089	+				-2.5
141,089	+				+0.1
141,089	+				-0.4
141,089	+				+0.5
141,089	+				+1.3
141,089	+				-0.1
141,089	+				+4.1
141,089	+				-0.9
141,089	+				+0.1
141,089	+				+1.4
141,090	-				+1.2
141,090	-				-0.4
141,090	-				-2.1
141,090	-				-0.2
141,090	-				-1.1
141,090	-				-2.4
141,090	-				+2.0
141,090	-				-1.2
141,090	-				+0.1
141,093	+				-1.9
141,093	+				+1.7
141,093	+				+3.1
141,093	+				+1.8
141,094	-				-0.2
141,094	-				-0.0
141,094	-				-0.4
141,094	-				-1.4
141,094	-				-0.2
141,094	-				+0.3
141,094	-				-2.0
141,094	-				-0.9
141,094	-				+0.4
141,094	-				+1.8
141,094	-				-1.9
141,096	-				+1.1
141,134	-				+1.8
141,171	+				+0.1
141,172	-				-1.2
141,190	+				+0.4
141,190	+				-1.9
141,190	+				-0.6
141,190	+				-0.7
141,191	-				-2.3
141,191	-				+2.1
141,324	+				-1.8
141,324	+				+0.8
141,324	+				-0.5
141,325	-				-0.2
141,325	-				+2.7
141,325	-				+0.9
141,325	-				+0.1
141,325	-				-1.2
141,351	+				-2.1
141,364	+				-3.0
141,364	+				-3.0
141,364	+				+0.1
141,365	-				-0.3
141,388	+				-1.7
141,389	-				-1.3
141,389	-				-2.0
141,392	+				-1.3
141,392	+				-2.1
141,392	+				+0.9
141,392	+				+0.9
141,393	-				+1.5
141,393	-				-1.3
141,393	-				+0.3
141,393	-				+0.1
141,393	-				+1.6
141,393	-				-1.9
141,407	+				+0.4
141,510	+				-0.6
141,511	-				-3.9
141,511	-				-1.1
141,665	+		GFF3314	0.15	-2.1
141,665	+		GFF3314	0.15	-0.5
141,665	+		GFF3314	0.15	+2.0
141,665	+		GFF3314	0.15	-0.8
141,665	+		GFF3314	0.15	+0.4
141,665	+		GFF3314	0.15	-0.0
141,666	-		GFF3314	0.15	-0.6
141,666	-		GFF3314	0.15	-1.5
141,666	-		GFF3314	0.15	-0.8
141,666	-		GFF3314	0.15	-1.4
141,746	+		GFF3314	0.24	-0.4
141,746	+		GFF3314	0.24	+0.1
141,747	-		GFF3314	0.24	+0.6
141,983	+		GFF3314	0.48	+0.4
142,079	+		GFF3314	0.58	+1.4
142,079	+		GFF3314	0.58	+0.4
142,079	+		GFF3314	0.58	+0.4
142,079	+		GFF3314	0.58	+0.6
142,097	+		GFF3314	0.60	+1.5
142,097	+		GFF3314	0.60	+0.1
142,097	+		GFF3314	0.60	+1.2
142,097	+		GFF3314	0.60	+1.8
142,097	+		GFF3314	0.60	+0.9
142,097	+		GFF3314	0.60	-1.1
142,098	-		GFF3314	0.60	-1.3
142,098	-		GFF3314	0.60	+0.8
142,098	-		GFF3314	0.60	-0.9
142,098	-		GFF3314	0.60	+0.8
142,098	-		GFF3314	0.60	-0.6
142,098	-		GFF3314	0.60	-3.0
142,098	-		GFF3314	0.60	-0.2
142,169	+		GFF3314	0.68	-1.1
142,169	+		GFF3314	0.68	+2.2
142,170	-		GFF3314	0.68	+0.6
142,170	-		GFF3314	0.68	-0.6
142,170	-		GFF3314	0.68	-0.6
142,170	-		GFF3314	0.68	+0.1
142,170	-		GFF3314	0.68	-0.3
142,170	-		GFF3314	0.68	-1.5
142,286	+		GFF3314	0.80	-1.4
142,286	+		GFF3314	0.80	-1.6
142,286	+		GFF3314	0.80	+0.4
142,286	+		GFF3314	0.80	+0.0
142,286	+		GFF3314	0.80	+2.0
142,286	+		GFF3314	0.80	-0.6
142,286	+		GFF3314	0.80	-0.8
142,286	+		GFF3314	0.80	-1.3
142,286	+		GFF3314	0.80	-0.4
142,287	-		GFF3314	0.80	+2.2
142,287	-		GFF3314	0.80	+0.3
142,287	-		GFF3314	0.80	-1.1
142,287	-		GFF3314	0.80	+0.1
142,287	-		GFF3314	0.80	-0.2
142,287	-		GFF3314	0.80	-1.9
142,313	+		GFF3314	0.83	-2.6
142,313	+		GFF3314	0.83	+1.4
142,313	+		GFF3314	0.83	+0.6
142,313	+		GFF3314	0.83	-1.5
142,313	+		GFF3314	0.83	-0.6
142,314	-		GFF3314	0.83	-0.6
142,314	-		GFF3314	0.83	+0.1
142,314	-		GFF3314	0.83	-1.1
142,316	+		GFF3314	0.83	-1.3
142,316	+		GFF3314	0.83	-0.2
142,317	-		GFF3314	0.83	+1.3
142,317	-		GFF3314	0.83	-1.1
142,403	+				+0.4
142,403	+				-0.9
142,404	-				-3.1
142,404	-				-0.2
142,584	+				-0.6
142,584	+				+0.7
142,584	+				+1.0
142,584	+				-0.7
142,584	+				-1.2
142,584	+				-2.4
142,584	+				-1.6
142,584	+				+1.4
142,584	+				-0.1
142,584	+				-1.6
142,588	+				+1.9
142,588	+				-1.2
142,588	+				-0.6
142,588	+				+0.9
142,588	+				-1.7
142,588	+				+0.6
142,588	+				-2.1
142,588	+				-0.6
142,588	+				-0.7
142,588	+				-1.8
142,588	+				-0.2
142,588	+				-0.9
142,588	+				-1.7
142,589	-				-0.4
142,589	-				-1.1
142,589	-				-0.4
142,589	-				-0.3
142,589	-				-0.6
142,589	-				+0.5
142,589	-				-0.6
142,589	-				+0.3
142,589	-				-2.7
142,589	-				-0.2
142,589	-				+0.2
142,589	-				-1.5
142,589	-				-2.5
142,589	-				-0.2
142,589	-				+0.4
142,589	-				-0.4
142,589	-				-3.1
142,838	+		GFF3315	0.63	-1.2
142,838	+		GFF3315	0.63	-2.1
142,838	+		GFF3315	0.63	+0.8
142,838	+		GFF3315	0.63	-0.2
142,838	+		GFF3315	0.63	+0.9
142,838	+		GFF3315	0.63	-2.0
142,839	-		GFF3315	0.63	-2.7
142,839	-		GFF3315	0.63	-3.4
142,839	-		GFF3315	0.63	-0.4
142,839	-		GFF3315	0.63	+2.2
142,839	-		GFF3315	0.63	-2.3
142,915	+		GFF3315	0.82	-1.8
142,915	+		GFF3315	0.82	-3.2
142,915	+		GFF3315	0.82	-1.0
142,915	+		GFF3315	0.82	-1.4
142,915	+		GFF3315	0.82	-0.2
142,915	+		GFF3315	0.82	+0.1
142,915	+		GFF3315	0.82	+1.4
142,916	-		GFF3315	0.82	-0.2
142,916	-		GFF3315	0.82	-0.9
142,998	+				+0.8
142,998	+				-0.7
142,998	+				-0.5
142,998	+				-1.4
142,998	+				-1.7
142,998	+				-1.3
143,221	+				-2.1
143,221	+				-0.7
143,221	+				-0.0
143,221	+				+0.8
143,221	+				+1.2
143,221	+				-0.5
143,221	+				-3.2
143,221	+				+1.3
143,222	-				-1.6
143,222	-				+0.4
143,222	-				-0.9
143,222	-				-1.0