Strain Fitness in Variovorax sp. SCN45 around GFF3283

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
104,638	+				+0.7
104,638	+				-1.0
104,638	+				-1.9
104,638	+				+2.4
104,638	+				-2.2
104,639	-				+0.8
104,639	-				+0.2
104,639	-				-0.4
104,639	-				-2.0
104,639	-				+0.1
105,085	+				-2.1
105,085	+				+0.1
105,085	+				-2.4
105,085	+				+2.1
105,085	+				-0.8
105,086	-				-1.3
105,086	-				+0.4
105,086	-				-0.4
105,475	+		GFF3283	0.21	-0.4
105,476	-		GFF3283	0.21	-1.1
105,476	-		GFF3283	0.21	-3.2
105,622	+		GFF3283	0.26	+0.4
105,622	+		GFF3283	0.26	-1.3
105,622	+		GFF3283	0.26	-2.5
105,622	+		GFF3283	0.26	-0.4
105,622	+		GFF3283	0.26	+1.0
105,623	-		GFF3283	0.26	-0.8
105,623	-		GFF3283	0.26	-0.4
105,623	-		GFF3283	0.26	+0.7
105,623	-		GFF3283	0.26	-0.9
105,623	-		GFF3283	0.26	-2.0
105,623	-		GFF3283	0.26	-1.3
105,623	-		GFF3283	0.26	+0.4
105,661	+		GFF3283	0.27	+0.1
105,661	+		GFF3283	0.27	-1.3
105,661	+		GFF3283	0.27	-0.4
105,661	+		GFF3283	0.27	-1.1
105,947	-		GFF3283	0.36	+0.1
106,343	-		GFF3283	0.48	-1.4
106,343	-		GFF3283	0.48	-2.1
106,343	-		GFF3283	0.48	-1.1
106,343	-		GFF3283	0.48	-1.2
106,496	+		GFF3283	0.53	+0.6
106,496	+		GFF3283	0.53	-0.2
106,497	-		GFF3283	0.53	-0.4
106,497	-		GFF3283	0.53	-0.8
106,497	-		GFF3283	0.53	+0.1
106,864	+		GFF3283	0.64	+1.3
106,865	-		GFF3283	0.64	+0.4
106,942	+		GFF3283	0.67	+0.0
106,942	+		GFF3283	0.67	-0.4
106,942	+		GFF3283	0.67	-1.2
106,942	+		GFF3283	0.67	+0.2
106,942	+		GFF3283	0.67	-0.8
106,942	+		GFF3283	0.67	-1.2
106,942	+		GFF3283	0.67	-0.4
106,942	+		GFF3283	0.67	-1.5
106,942	+		GFF3283	0.67	-0.1
106,942	+		GFF3283	0.67	-1.6
106,942	+		GFF3283	0.67	+0.0
106,942	+		GFF3283	0.67	-0.8
106,942	+		GFF3283	0.67	-1.2
106,942	+		GFF3283	0.67	+0.8
106,942	+		GFF3283	0.67	-3.3
106,942	+		GFF3283	0.67	+0.4
106,942	+		GFF3283	0.67	-2.8
106,942	+		GFF3283	0.67	+1.1
106,942	+		GFF3283	0.67	-1.7
106,942	+		GFF3283	0.67	+0.3
106,943	-		GFF3283	0.67	-3.1
106,943	-		GFF3283	0.67	-0.8
106,943	-		GFF3283	0.67	-0.4
106,943	-		GFF3283	0.67	+2.1
106,943	-		GFF3283	0.67	-0.3
106,943	-		GFF3283	0.67	+1.7
106,943	-		GFF3283	0.67	+2.4
106,943	-		GFF3283	0.67	+0.4
107,158	+		GFF3283	0.74	-2.6
107,159	-		GFF3283	0.74	+0.4
107,313	-		GFF3283	0.78	-2.8
107,429	-		GFF3283	0.82	+2.4
107,429	-		GFF3283	0.82	-2.1
107,620	+		GFF3283	0.88	-0.4
107,621	-		GFF3283	0.88	-1.7
107,621	-		GFF3283	0.88	+0.4
107,710	+				+0.8
107,710	+				-0.5
107,710	+				+1.1
107,710	+				-0.9
107,710	+				-2.2
107,710	+				-3.1
107,711	-				-0.1
107,711	-				-1.3
108,064	-				-1.8
108,114	+				+0.3
108,115	-				+0.5
108,115	-				+1.5
108,177	-				-0.4
108,321	+				-0.2
108,322	-				-3.0
108,645	+		GFF3284	0.20	-0.2
108,711	+		GFF3284	0.22	-1.4
108,711	+		GFF3284	0.22	-0.4
108,712	-		GFF3284	0.22	-2.0
108,984	+		GFF3284	0.30	+0.1
108,984	+		GFF3284	0.30	-0.7
108,984	+		GFF3284	0.30	+2.4
108,984	+		GFF3284	0.30	+2.4
108,984	+		GFF3284	0.30	+0.8
108,985	-		GFF3284	0.30	+1.1
108,985	-		GFF3284	0.30	+0.4
108,985	-		GFF3284	0.30	-0.6
108,985	-		GFF3284	0.30	+1.1