Strain Fitness in Variovorax sp. SCN45 around GFF3266

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
85,610	+		GFF3265	0.35	-1.1
85,691	+		GFF3265	0.42	-1.1
85,691	+		GFF3265	0.42	+1.4
85,754	+		GFF3265	0.48	-0.6
86,028	-		GFF3265	0.72	-0.2
86,267	+				-0.2
86,276	+				-1.6
86,288	+				-0.6
86,289	-				+0.1
86,434	+				-3.1
86,434	+				+0.2
86,434	+				-1.4
86,434	+				-0.7
86,434	+				-2.3
86,434	+				-1.1
86,435	-				-1.7
86,435	-				-1.9
86,435	-				-0.6
86,435	-				-2.3
86,435	-				-0.9
86,444	+				-0.6
86,445	-				-1.8
86,447	-				-0.3
86,486	+				-3.4
86,486	+				-1.3
86,486	+				-2.6
86,486	+				-0.8
86,486	+				-4.1
86,486	+				-0.8
86,486	+				-0.8
86,486	+				-2.2
86,486	+				-0.6
86,486	+				-0.2
86,486	+				-0.6
86,486	+				+0.1
86,486	+				-0.6
86,486	+				-0.4
86,486	+				-2.8
86,486	+				+4.0
86,486	+				-4.4
86,486	+				-0.9
86,487	-				-1.4
86,487	-				+0.3
86,487	-				+1.4
86,487	-				+2.3
86,487	-				-0.9
86,487	-				+1.2
86,487	-				+2.9
86,487	-				+0.1
86,487	-				-3.7
86,487	-				+2.2
86,487	-				+0.1
86,487	-				-0.4
86,487	-				-1.0
86,487	-				+0.1
86,487	-				-0.3
86,488	+				-0.4
86,488	+				+1.4
86,488	+				-1.7
86,488	+				-1.1
86,488	+				-0.1
86,488	+				-1.3
86,489	-				-0.9
86,489	-				+2.7
86,489	-				-1.0
86,489	-				-0.1
86,489	-				-1.2
86,489	-				-3.2
86,489	-				-2.7
86,489	-				-1.4
86,489	-				+1.2
86,510	-				+0.2
86,671	+		GFF3266	0.29	+1.6
86,671	+		GFF3266	0.29	+0.5
86,671	+		GFF3266	0.29	-1.4
86,671	+		GFF3266	0.29	+0.6
86,671	+		GFF3266	0.29	+0.1
86,672	-		GFF3266	0.29	-2.0
86,672	-		GFF3266	0.29	-0.8
86,672	-		GFF3266	0.29	-0.0
86,672	-		GFF3266	0.29	+1.2
86,672	-		GFF3266	0.29	-1.9
86,672	-		GFF3266	0.29	-0.0
86,672	-		GFF3266	0.29	-0.1
86,672	-		GFF3266	0.29	+0.2
86,672	-		GFF3266	0.29	+2.2
86,672	-		GFF3266	0.29	-0.8
86,672	-		GFF3266	0.29	-0.3
86,672	-		GFF3266	0.29	+0.8
86,672	-		GFF3266	0.29	+0.7
86,672	-		GFF3266	0.29	-1.5
86,672	-		GFF3266	0.29	+1.9
86,672	-		GFF3266	0.29	-1.2
86,751	+		GFF3266	0.43	+1.5
86,751	+		GFF3266	0.43	+1.8
86,752	-		GFF3266	0.43	-0.4
86,752	-		GFF3266	0.43	+1.0
86,899	+		GFF3266	0.69	+0.1
86,899	+		GFF3266	0.69	-2.6
86,899	+		GFF3266	0.69	+0.2
86,899	+		GFF3266	0.69	-1.4
86,899	+		GFF3266	0.69	-1.3
86,899	+		GFF3266	0.69	-1.5
86,899	+		GFF3266	0.69	-0.9
86,899	+		GFF3266	0.69	+1.9
86,899	+		GFF3266	0.69	-2.0
86,899	+		GFF3266	0.69	-0.5
86,899	+		GFF3266	0.69	-1.4
86,899	+		GFF3266	0.69	+1.3
86,899	+		GFF3266	0.69	-0.3
86,899	+		GFF3266	0.69	-0.3
86,899	+		GFF3266	0.69	-0.6
86,899	+		GFF3266	0.69	+0.6
86,900	-		GFF3266	0.70	-0.4
86,900	-		GFF3266	0.70	-1.0
86,900	-		GFF3266	0.70	+0.5
86,900	-		GFF3266	0.70	+0.4
86,900	-		GFF3266	0.70	-0.8
86,900	-		GFF3266	0.70	+0.5
86,900	-		GFF3266	0.70	+1.1
86,900	-		GFF3266	0.70	+0.4
86,900	-		GFF3266	0.70	-0.5
86,900	-		GFF3266	0.70	+0.5
86,900	-		GFF3266	0.70	+0.3
86,900	-		GFF3266	0.70	-1.7
86,900	-		GFF3266	0.70	+0.5
86,900	-		GFF3266	0.70	-2.4
86,900	-		GFF3266	0.70	-0.3
86,900	-		GFF3266	0.70	+0.1
87,042	+				-0.2
87,042	+				+0.8
87,042	+				+0.2
87,042	+				-0.9
87,042	+				-0.5
87,042	+				-0.1
87,042	+				-2.6
87,042	+				-1.7
87,043	-				+0.8
87,043	-				-0.0
87,043	-				-0.6
87,043	-				+0.0
87,043	-				-2.3
87,043	-				-2.8
87,043	-				-0.2
87,132	+				-0.2
87,133	-				-0.4
87,250	+				-0.2
87,250	+				+2.4
87,250	+				-2.6
87,275	+				-1.7
87,275	+				+0.2
87,275	+				+1.5
87,275	+				+0.8
87,275	+				+0.7
87,276	-				-1.6
87,276	-				+0.1
87,276	-				-0.6
87,276	-				-2.1
87,276	-				+2.4
87,276	-				-1.8
87,276	-				+0.4
87,276	-				+0.9
87,276	-				-0.9
87,276	-				+4.0
87,276	-				-2.9
87,281	+				-0.6
87,282	-				+1.7
87,282	-				-0.2
87,282	-				+0.2
87,320	-				-1.6
87,345	+				-0.4
87,345	+				-2.0
87,345	+				-0.4
87,345	+				-1.1
87,345	+				-2.4
87,345	+				+0.5
87,346	-				-0.8
87,346	-				-1.3
87,346	-				+0.6
87,346	-				-0.6
87,346	-				-2.3
87,391	+				+0.7
87,391	+				-1.8
87,391	+				+1.1
87,391	+				+2.4
87,392	-				-0.1
87,392	-				-0.9
87,392	-				-0.1
87,515	+				-1.1
87,515	+				-1.5
87,515	+				-0.3
87,515	+				-0.6
87,515	+				+0.0
87,515	+				+0.3
87,515	+				-1.9
87,515	+				+0.6
87,515	+				-0.4
87,515	+				-0.7
87,516	-				+2.4
87,516	-				-0.4
87,516	-				-0.4
87,517	+				+0.6
87,517	+				-0.4
87,517	+				+0.5
87,517	+				+2.0
87,517	+				-0.4
87,517	+				-0.8
87,517	+				+0.8
87,517	+				-0.7
87,517	+				-0.1
87,517	+				+0.8
87,517	+				-2.8
87,517	+				+0.7
87,517	+				+0.7
87,517	+				-1.2
87,517	+				-0.1
87,517	+				+0.1
87,518	-				+0.8
87,518	-				-0.6
87,518	-				-3.8
87,518	-				+0.8
87,518	-				-0.6
87,518	-				-2.8
87,545	+				+0.6
87,545	+				-0.2
87,545	+				+0.4
87,546	-				+0.1
87,546	-				-1.0
87,546	-				-2.5
87,546	-				-0.9
87,546	-				+0.1
87,546	-				-1.3
87,564	-				-0.8
87,564	-				-1.3
87,831	-		GFF3267	0.56	+1.4
87,854	+		GFF3267	0.60	-2.0
87,854	+		GFF3267	0.60	+0.5
87,878	+		GFF3267	0.64	+0.2
87,878	+		GFF3267	0.64	+1.8
87,879	-		GFF3267	0.65	-1.4
87,879	-		GFF3267	0.65	-0.6
87,920	+		GFF3267	0.72	+0.0
87,983	+		GFF3267	0.84	+0.4
88,040	+				-1.4
88,041	-				-0.5
88,041	-				+1.1
88,065	-				+0.8
88,065	-				-1.7
88,065	-				-2.5