Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3258 and GFF3259 overlap by 29 nucleotides GFF3259 and GFF3260 overlap by 4 nucleotides GFF3260 and GFF3261 are separated by 91 nucleotides GFF3261 and GFF3262 are separated by 33 nucleotides
GFF3258 - hypothetical protein, at 76,364 to 79,288
GFF3258
GFF3259 - Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23), at 79,260 to 80,120
GFF3259
GFF3260 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 80,117 to 81,628
GFF3260
GFF3261 - FIG003003: hypothetical protein, at 81,720 to 82,499
GFF3261
GFF3262 - Polymer-forming bactofilin, at 82,533 to 83,033
GFF3262
Position (kb) 80
81
82 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 79.348 kb on + strand, within GFF3259 at 79.348 kb on + strand, within GFF3259 at 79.348 kb on + strand, within GFF3259 at 79.348 kb on + strand, within GFF3259 at 79.349 kb on - strand, within GFF3259 at 79.451 kb on - strand, within GFF3259 at 79.510 kb on + strand, within GFF3259 at 79.510 kb on + strand, within GFF3259 at 79.511 kb on - strand, within GFF3259 at 79.511 kb on - strand, within GFF3259 at 79.570 kb on + strand, within GFF3259 at 79.570 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.603 kb on + strand, within GFF3259 at 79.604 kb on - strand, within GFF3259 at 79.604 kb on - strand, within GFF3259 at 79.604 kb on - strand, within GFF3259 at 79.604 kb on - strand, within GFF3259 at 79.972 kb on + strand, within GFF3259 at 79.973 kb on - strand, within GFF3259 at 80.209 kb on - strand at 80.226 kb on + strand at 80.343 kb on + strand, within GFF3260 at 80.343 kb on + strand, within GFF3260 at 80.344 kb on - strand, within GFF3260 at 80.469 kb on + strand, within GFF3260 at 80.469 kb on + strand, within GFF3260 at 80.469 kb on + strand, within GFF3260 at 80.469 kb on + strand, within GFF3260 at 80.469 kb on + strand, within GFF3260 at 80.565 kb on + strand, within GFF3260 at 80.565 kb on + strand, within GFF3260 at 80.565 kb on + strand, within GFF3260 at 80.566 kb on - strand, within GFF3260 at 80.566 kb on - strand, within GFF3260 at 80.715 kb on + strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.716 kb on - strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.739 kb on + strand, within GFF3260 at 80.740 kb on - strand, within GFF3260 at 80.740 kb on - strand, within GFF3260 at 80.740 kb on - strand, within GFF3260 at 80.740 kb on - strand, within GFF3260 at 80.740 kb on - strand, within GFF3260 at 80.997 kb on + strand, within GFF3260 at 80.997 kb on + strand, within GFF3260 at 80.998 kb on - strand, within GFF3260 at 80.998 kb on - strand, within GFF3260 at 80.998 kb on - strand, within GFF3260 at 81.069 kb on + strand, within GFF3260 at 81.069 kb on + strand, within GFF3260 at 81.084 kb on + strand, within GFF3260 at 81.084 kb on + strand, within GFF3260 at 81.084 kb on + strand, within GFF3260 at 81.084 kb on + strand, within GFF3260 at 81.085 kb on - strand, within GFF3260 at 81.085 kb on - strand, within GFF3260 at 81.085 kb on - strand, within GFF3260 at 81.180 kb on + strand, within GFF3260 at 81.180 kb on + strand, within GFF3260 at 81.180 kb on + strand, within GFF3260 at 81.180 kb on + strand, within GFF3260 at 81.181 kb on - strand, within GFF3260 at 81.181 kb on - strand, within GFF3260 at 81.181 kb on - strand, within GFF3260 at 81.190 kb on - strand, within GFF3260 at 81.216 kb on + strand, within GFF3260 at 81.216 kb on + strand, within GFF3260 at 81.217 kb on - strand, within GFF3260 at 81.217 kb on - strand, within GFF3260 at 81.234 kb on + strand, within GFF3260 at 81.234 kb on + strand, within GFF3260 at 81.235 kb on - strand, within GFF3260 at 81.235 kb on - strand, within GFF3260 at 81.235 kb on - strand, within GFF3260 at 81.235 kb on - strand, within GFF3260 at 81.262 kb on + strand, within GFF3260 at 81.262 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.303 kb on + strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.304 kb on - strand, within GFF3260 at 81.516 kb on + strand at 81.516 kb on + strand at 81.516 kb on + strand at 81.516 kb on + strand at 81.516 kb on + strand at 81.516 kb on + strand at 81.516 kb on + strand at 81.517 kb on - strand at 81.517 kb on - strand at 81.517 kb on - strand at 81.517 kb on - strand at 81.689 kb on - strand at 81.755 kb on + strand at 81.755 kb on + strand at 81.756 kb on - strand at 81.756 kb on - strand at 81.756 kb on - strand at 81.771 kb on + strand at 81.771 kb on + strand at 81.771 kb on + strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.772 kb on - strand at 81.795 kb on + strand at 81.795 kb on + strand at 81.796 kb on - strand at 81.796 kb on - strand at 81.831 kb on + strand, within GFF3261 at 81.831 kb on + strand, within GFF3261 at 81.831 kb on + strand, within GFF3261 at 81.831 kb on + strand, within GFF3261 at 81.832 kb on - strand, within GFF3261 at 81.832 kb on - strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.873 kb on + strand, within GFF3261 at 81.874 kb on - strand, within GFF3261 at 81.874 kb on - strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.876 kb on + strand, within GFF3261 at 81.877 kb on - strand, within GFF3261 at 81.877 kb on - strand, within GFF3261 at 81.877 kb on - strand, within GFF3261 at 81.877 kb on - strand, within GFF3261 at 82.197 kb on + strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.198 kb on - strand, within GFF3261 at 82.332 kb on + strand, within GFF3261 at 82.333 kb on - strand, within GFF3261 at 82.333 kb on - strand, within GFF3261 at 82.413 kb on + strand, within GFF3261 at 82.413 kb on + strand, within GFF3261 at 82.413 kb on + strand, within GFF3261 at 82.601 kb on - strand, within GFF3262
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 79,348 + GFF3259 0.10 -3.9 79,348 + GFF3259 0.10 +0.7 79,348 + GFF3259 0.10 -0.2 79,348 + GFF3259 0.10 +0.0 79,349 - GFF3259 0.10 -1.9 79,451 - GFF3259 0.22 -2.7 79,510 + GFF3259 0.29 -2.4 79,510 + GFF3259 0.29 +1.3 79,511 - GFF3259 0.29 -0.4 79,511 - GFF3259 0.29 +1.1 79,570 + GFF3259 0.36 -1.3 79,570 + GFF3259 0.36 +0.2 79,603 + GFF3259 0.40 -2.4 79,603 + GFF3259 0.40 -1.6 79,603 + GFF3259 0.40 -2.7 79,603 + GFF3259 0.40 +0.5 79,603 + GFF3259 0.40 -0.2 79,603 + GFF3259 0.40 -1.0 79,603 + GFF3259 0.40 -2.0 79,604 - GFF3259 0.40 +3.4 79,604 - GFF3259 0.40 -0.3 79,604 - GFF3259 0.40 -1.9 79,604 - GFF3259 0.40 -2.2 79,972 + GFF3259 0.83 +2.5 79,973 - GFF3259 0.83 +3.1 80,209 - +0.9 80,226 + -0.3 80,343 + GFF3260 0.15 -1.3 80,343 + GFF3260 0.15 -0.5 80,344 - GFF3260 0.15 +1.1 80,469 + GFF3260 0.23 +1.4 80,469 + GFF3260 0.23 +1.3 80,469 + GFF3260 0.23 -1.8 80,469 + GFF3260 0.23 +0.6 80,469 + GFF3260 0.23 -1.5 80,565 + GFF3260 0.30 -3.3 80,565 + GFF3260 0.30 -3.1 80,565 + GFF3260 0.30 +1.4 80,566 - GFF3260 0.30 -3.4 80,566 - GFF3260 0.30 -1.7 80,715 + GFF3260 0.40 +0.8 80,716 - GFF3260 0.40 +1.2 80,716 - GFF3260 0.40 -0.9 80,716 - GFF3260 0.40 +2.0 80,716 - GFF3260 0.40 -3.1 80,716 - GFF3260 0.40 -1.9 80,716 - GFF3260 0.40 -0.2 80,739 + GFF3260 0.41 -1.6 80,739 + GFF3260 0.41 +0.4 80,739 + GFF3260 0.41 +0.8 80,739 + GFF3260 0.41 -1.2 80,739 + GFF3260 0.41 +0.1 80,739 + GFF3260 0.41 -0.5 80,739 + GFF3260 0.41 -0.9 80,740 - GFF3260 0.41 +2.7 80,740 - GFF3260 0.41 +1.7 80,740 - GFF3260 0.41 -0.7 80,740 - GFF3260 0.41 -1.0 80,740 - GFF3260 0.41 +0.2 80,997 + GFF3260 0.58 +0.8 80,997 + GFF3260 0.58 -1.9 80,998 - GFF3260 0.58 -1.1 80,998 - GFF3260 0.58 -0.9 80,998 - GFF3260 0.58 -2.3 81,069 + GFF3260 0.63 -0.2 81,069 + GFF3260 0.63 -0.9 81,084 + GFF3260 0.64 +2.6 81,084 + GFF3260 0.64 -1.2 81,084 + GFF3260 0.64 -1.2 81,084 + GFF3260 0.64 +2.4 81,085 - GFF3260 0.64 -0.2 81,085 - GFF3260 0.64 -1.5 81,085 - GFF3260 0.64 +0.4 81,180 + GFF3260 0.70 -0.6 81,180 + GFF3260 0.70 +1.3 81,180 + GFF3260 0.70 -3.0 81,180 + GFF3260 0.70 -1.8 81,181 - GFF3260 0.70 +1.8 81,181 - GFF3260 0.70 -1.1 81,181 - GFF3260 0.70 -0.6 81,190 - GFF3260 0.71 -3.0 81,216 + GFF3260 0.73 +0.0 81,216 + GFF3260 0.73 -1.1 81,217 - GFF3260 0.73 +0.8 81,217 - GFF3260 0.73 +1.9 81,234 + GFF3260 0.74 -1.1 81,234 + GFF3260 0.74 -2.0 81,235 - GFF3260 0.74 +0.8 81,235 - GFF3260 0.74 -0.0 81,235 - GFF3260 0.74 -1.2 81,235 - GFF3260 0.74 -0.8 81,262 + GFF3260 0.76 -0.9 81,262 + GFF3260 0.76 +0.5 81,303 + GFF3260 0.78 -1.5 81,303 + GFF3260 0.78 +0.0 81,303 + GFF3260 0.78 -3.7 81,303 + GFF3260 0.78 -1.4 81,303 + GFF3260 0.78 +2.9 81,303 + GFF3260 0.78 -0.5 81,303 + GFF3260 0.78 +2.0 81,303 + GFF3260 0.78 +1.0 81,303 + GFF3260 0.78 -0.6 81,303 + GFF3260 0.78 +0.6 81,304 - GFF3260 0.79 -2.1 81,304 - GFF3260 0.79 -2.7 81,304 - GFF3260 0.79 +0.4 81,304 - GFF3260 0.79 +2.0 81,304 - GFF3260 0.79 +0.0 81,304 - GFF3260 0.79 -0.8 81,304 - GFF3260 0.79 -0.5 81,516 + -0.3 81,516 + +2.4 81,516 + -0.2 81,516 + +0.8 81,516 + +0.4 81,516 + +0.4 81,516 + +0.8 81,517 - +0.3 81,517 - +1.2 81,517 - -1.5 81,517 - -1.3 81,689 - -2.3 81,755 + -1.7 81,755 + +0.6 81,756 - +0.1 81,756 - -1.8 81,756 - -1.0 81,771 + +0.0 81,771 + -2.1 81,771 + -2.4 81,772 - -1.0 81,772 - -1.6 81,772 - +0.3 81,772 - -0.3 81,772 - -1.8 81,772 - -0.0 81,772 - -0.4 81,772 - +0.3 81,772 - +0.9 81,772 - -0.4 81,772 - -1.5 81,795 + +2.2 81,795 + +0.6 81,796 - +0.1 81,796 - -0.2 81,831 + GFF3261 0.14 -1.9 81,831 + GFF3261 0.14 -0.1 81,831 + GFF3261 0.14 +0.5 81,831 + GFF3261 0.14 -0.8 81,832 - GFF3261 0.14 -0.8 81,832 - GFF3261 0.14 -0.4 81,873 + GFF3261 0.20 +0.9 81,873 + GFF3261 0.20 -0.8 81,873 + GFF3261 0.20 +1.4 81,873 + GFF3261 0.20 -0.8 81,873 + GFF3261 0.20 -0.6 81,873 + GFF3261 0.20 +0.1 81,873 + GFF3261 0.20 -1.1 81,874 - GFF3261 0.20 +0.1 81,874 - GFF3261 0.20 +0.9 81,876 + GFF3261 0.20 -0.4 81,876 + GFF3261 0.20 -2.4 81,876 + GFF3261 0.20 -2.4 81,876 + GFF3261 0.20 -0.9 81,876 + GFF3261 0.20 +0.1 81,876 + GFF3261 0.20 -0.8 81,876 + GFF3261 0.20 +2.8 81,877 - GFF3261 0.20 +0.7 81,877 - GFF3261 0.20 +0.2 81,877 - GFF3261 0.20 -1.0 81,877 - GFF3261 0.20 +0.7 82,197 + GFF3261 0.61 -1.5 82,198 - GFF3261 0.61 -0.9 82,198 - GFF3261 0.61 -0.4 82,198 - GFF3261 0.61 +1.3 82,198 - GFF3261 0.61 -0.7 82,198 - GFF3261 0.61 -1.7 82,198 - GFF3261 0.61 -0.6 82,332 + GFF3261 0.78 -0.2 82,333 - GFF3261 0.79 +0.1 82,333 - GFF3261 0.79 -1.3 82,413 + GFF3261 0.89 -1.1 82,413 + GFF3261 0.89 +0.5 82,413 + GFF3261 0.89 -2.2 82,601 - GFF3262 0.14 -1.5
Or see this region's nucleotide sequence