Strain Fitness in Variovorax sp. SCN45 around GFF325

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF323 and GFF324 are separated by 38 nucleotidesGFF324 and GFF325 are separated by 154 nucleotidesGFF325 and GFF326 are separated by 52 nucleotides GFF323 - Possible pyrimidine-degrading protein DUF1688, at 355,148 to 356,554 GFF323 GFF324 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 356,593 to 357,222 GFF324 GFF325 - Nucleoside ABC transporter, substrate-binding protein, at 357,377 to 358,381 GFF325 GFF326 - Polysaccharide deacetylase, caspase activity, at 358,434 to 361,211 GFF326 Position (kb) 357 358 359Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 356.506 kb on + strandat 356.506 kb on + strandat 356.552 kb on + strandat 356.553 kb on - strandat 356.579 kb on + strandat 356.579 kb on + strandat 356.580 kb on - strandat 356.580 kb on - strandat 356.716 kb on + strand, within GFF324at 356.716 kb on + strand, within GFF324at 356.716 kb on + strand, within GFF324at 356.717 kb on - strand, within GFF324at 356.717 kb on - strand, within GFF324at 356.717 kb on - strand, within GFF324at 356.717 kb on - strand, within GFF324at 356.899 kb on + strand, within GFF324at 356.900 kb on - strand, within GFF324at 356.932 kb on + strand, within GFF324at 356.932 kb on + strand, within GFF324at 356.933 kb on - strand, within GFF324at 356.933 kb on - strand, within GFF324at 356.933 kb on - strand, within GFF324at 356.933 kb on - strand, within GFF324at 356.933 kb on - strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.935 kb on + strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 356.936 kb on - strand, within GFF324at 357.130 kb on + strand, within GFF324at 357.130 kb on + strand, within GFF324at 357.130 kb on + strand, within GFF324at 357.130 kb on + strand, within GFF324at 357.130 kb on + strand, within GFF324at 357.131 kb on - strand, within GFF324at 357.131 kb on - strand, within GFF324at 357.131 kb on - strand, within GFF324at 357.169 kb on + strandat 357.169 kb on + strandat 357.170 kb on - strandat 357.170 kb on - strandat 357.170 kb on - strandat 357.170 kb on - strandat 357.221 kb on - strandat 357.221 kb on - strandat 357.359 kb on - strandat 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.491 kb on + strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.492 kb on - strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.572 kb on + strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.573 kb on - strand, within GFF325at 357.606 kb on - strand, within GFF325at 357.606 kb on - strand, within GFF325at 357.626 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.776 kb on + strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.777 kb on - strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.794 kb on + strand, within GFF325at 357.795 kb on - strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.022 kb on + strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.023 kb on - strand, within GFF325at 358.205 kb on + strand, within GFF325at 358.205 kb on + strand, within GFF325at 358.206 kb on - strand, within GFF325at 358.206 kb on - strand, within GFF325at 358.206 kb on - strand, within GFF325at 358.214 kb on + strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.215 kb on - strand, within GFF325at 358.379 kb on + strandat 358.379 kb on + strandat 358.379 kb on + strandat 358.379 kb on + strandat 358.379 kb on + strandat 358.380 kb on - strandat 358.380 kb on - strandat 358.380 kb on - strandat 358.380 kb on - strandat 358.380 kb on - strandat 358.960 kb on - strand, within GFF326at 359.037 kb on + strand, within GFF326at 359.037 kb on + strand, within GFF326at 359.037 kb on + strand, within GFF326at 359.037 kb on + strand, within GFF326at 359.038 kb on - strand, within GFF326at 359.038 kb on - strand, within GFF326at 359.061 kb on + strand, within GFF326at 359.061 kb on + strand, within GFF326at 359.061 kb on + strand, within GFF326at 359.062 kb on - strand, within GFF326at 359.106 kb on + strand, within GFF326at 359.107 kb on - strand, within GFF326at 359.107 kb on - strand, within GFF326at 359.107 kb on - strand, within GFF326at 359.271 kb on + strand, within GFF326at 359.271 kb on + strand, within GFF326

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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356,506 + -0.8
356,506 + -1.6
356,552 + -0.6
356,553 - -2.3
356,579 + +0.7
356,579 + +0.5
356,580 - +0.5
356,580 - -0.8
356,716 + GFF324 0.20 -2.6
356,716 + GFF324 0.20 -1.5
356,716 + GFF324 0.20 +1.1
356,717 - GFF324 0.20 -0.7
356,717 - GFF324 0.20 -0.3
356,717 - GFF324 0.20 +0.2
356,717 - GFF324 0.20 +1.4
356,899 + GFF324 0.49 -0.6
356,900 - GFF324 0.49 +1.3
356,932 + GFF324 0.54 -0.6
356,932 + GFF324 0.54 +0.1
356,933 - GFF324 0.54 -3.3
356,933 - GFF324 0.54 -0.4
356,933 - GFF324 0.54 +0.6
356,933 - GFF324 0.54 -1.3
356,933 - GFF324 0.54 +0.7
356,935 + GFF324 0.54 -0.6
356,935 + GFF324 0.54 -2.1
356,935 + GFF324 0.54 +0.3
356,935 + GFF324 0.54 -2.6
356,935 + GFF324 0.54 +0.3
356,935 + GFF324 0.54 -1.3
356,935 + GFF324 0.54 -1.7
356,935 + GFF324 0.54 -1.6
356,935 + GFF324 0.54 -1.8
356,935 + GFF324 0.54 -3.6
356,936 - GFF324 0.54 -0.2
356,936 - GFF324 0.54 -0.7
356,936 - GFF324 0.54 -0.3
356,936 - GFF324 0.54 -2.8
356,936 - GFF324 0.54 +0.6
356,936 - GFF324 0.54 +0.6
356,936 - GFF324 0.54 +0.0
357,130 + GFF324 0.85 -1.5
357,130 + GFF324 0.85 -1.1
357,130 + GFF324 0.85 +1.6
357,130 + GFF324 0.85 -1.1
357,130 + GFF324 0.85 -0.2
357,131 - GFF324 0.85 -4.0
357,131 - GFF324 0.85 -0.4
357,131 - GFF324 0.85 +0.2
357,169 + +0.1
357,169 + -0.6
357,170 - -0.9
357,170 - -2.0
357,170 - -1.4
357,170 - -0.1
357,221 - +1.3
357,221 - +0.6
357,359 - +0.6
357,491 + GFF325 0.11 -0.4
357,491 + GFF325 0.11 -1.5
357,491 + GFF325 0.11 -0.3
357,491 + GFF325 0.11 +0.4
357,491 + GFF325 0.11 +0.9
357,491 + GFF325 0.11 -0.1
357,491 + GFF325 0.11 +0.1
357,491 + GFF325 0.11 +1.7
357,491 + GFF325 0.11 -0.6
357,492 - GFF325 0.11 -0.2
357,492 - GFF325 0.11 -0.6
357,492 - GFF325 0.11 +2.0
357,492 - GFF325 0.11 +0.7
357,492 - GFF325 0.11 -2.1
357,492 - GFF325 0.11 -1.3
357,492 - GFF325 0.11 +2.8
357,492 - GFF325 0.11 -1.9
357,492 - GFF325 0.11 -2.1
357,572 + GFF325 0.19 +1.0
357,572 + GFF325 0.19 -1.3
357,572 + GFF325 0.19 +0.5
357,572 + GFF325 0.19 -1.5
357,572 + GFF325 0.19 +1.8
357,572 + GFF325 0.19 -0.5
357,572 + GFF325 0.19 -2.5
357,573 - GFF325 0.20 +0.7
357,573 - GFF325 0.20 -0.9
357,573 - GFF325 0.20 -0.5
357,573 - GFF325 0.20 +0.1
357,606 - GFF325 0.23 +1.4
357,606 - GFF325 0.23 -3.6
357,626 + GFF325 0.25 +1.8
357,776 + GFF325 0.40 -0.5
357,776 + GFF325 0.40 -1.9
357,776 + GFF325 0.40 -2.1
357,776 + GFF325 0.40 +0.9
357,776 + GFF325 0.40 +0.4
357,776 + GFF325 0.40 +1.3
357,776 + GFF325 0.40 +0.6
357,776 + GFF325 0.40 +1.4
357,776 + GFF325 0.40 +1.7
357,776 + GFF325 0.40 +0.1
357,776 + GFF325 0.40 +1.4
357,776 + GFF325 0.40 +1.5
357,776 + GFF325 0.40 -2.5
357,776 + GFF325 0.40 -2.6
357,776 + GFF325 0.40 +0.1
357,777 - GFF325 0.40 +0.8
357,777 - GFF325 0.40 -1.3
357,777 - GFF325 0.40 -1.4
357,777 - GFF325 0.40 -0.1
357,777 - GFF325 0.40 -2.0
357,777 - GFF325 0.40 -1.1
357,777 - GFF325 0.40 +0.8
357,777 - GFF325 0.40 -1.1
357,777 - GFF325 0.40 +0.8
357,777 - GFF325 0.40 -0.2
357,777 - GFF325 0.40 +0.7
357,777 - GFF325 0.40 +0.8
357,794 + GFF325 0.41 +0.4
357,794 + GFF325 0.41 -0.6
357,794 + GFF325 0.41 -0.2
357,794 + GFF325 0.41 -0.7
357,795 - GFF325 0.42 +0.8
358,022 + GFF325 0.64 +0.2
358,022 + GFF325 0.64 -1.3
358,022 + GFF325 0.64 -0.1
358,022 + GFF325 0.64 -0.9
358,022 + GFF325 0.64 -0.1
358,022 + GFF325 0.64 +0.2
358,022 + GFF325 0.64 -0.5
358,023 - GFF325 0.64 -2.1
358,023 - GFF325 0.64 -4.4
358,023 - GFF325 0.64 +1.5
358,023 - GFF325 0.64 +0.0
358,023 - GFF325 0.64 +0.1
358,023 - GFF325 0.64 -0.7
358,023 - GFF325 0.64 +1.4
358,023 - GFF325 0.64 -0.1
358,205 + GFF325 0.82 -0.8
358,205 + GFF325 0.82 +0.7
358,206 - GFF325 0.82 +2.3
358,206 - GFF325 0.82 -1.6
358,206 - GFF325 0.82 -0.7
358,214 + GFF325 0.83 -0.2
358,215 - GFF325 0.83 +2.3
358,215 - GFF325 0.83 -1.0
358,215 - GFF325 0.83 -2.5
358,215 - GFF325 0.83 +1.1
358,379 + -0.3
358,379 + -0.5
358,379 + -0.9
358,379 + -3.4
358,379 + +0.2
358,380 - +0.6
358,380 - -0.9
358,380 - -1.5
358,380 - -1.5
358,380 - +0.7
358,960 - GFF326 0.19 -0.9
359,037 + GFF326 0.22 +3.2
359,037 + GFF326 0.22 -2.2
359,037 + GFF326 0.22 -0.3
359,037 + GFF326 0.22 +2.1
359,038 - GFF326 0.22 +0.8
359,038 - GFF326 0.22 -2.6
359,061 + GFF326 0.23 -0.1
359,061 + GFF326 0.23 -0.6
359,061 + GFF326 0.23 -1.1
359,062 - GFF326 0.23 -1.8
359,106 + GFF326 0.24 +1.1
359,107 - GFF326 0.24 +1.2
359,107 - GFF326 0.24 +1.1
359,107 - GFF326 0.24 -1.1
359,271 + GFF326 0.30 +0.5
359,271 + GFF326 0.30 +0.2

Or see this region's nucleotide sequence