Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3136 and GFF3137 are separated by 15 nucleotides GFF3137 and GFF3138 are separated by 190 nucleotides
GFF3136 - no description, at 565,537 to 566,523
GFF3136
GFF3137 - hypothetical protein, at 566,539 to 568,008
GFF3137
GFF3138 - VgrG protein, at 568,199 to 570,244
GFF3138
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 565.639 kb on + strand, within GFF3136 at 565.650 kb on + strand, within GFF3136 at 565.651 kb on - strand, within GFF3136 at 565.651 kb on - strand, within GFF3136 at 565.718 kb on + strand, within GFF3136 at 565.719 kb on - strand, within GFF3136 at 565.719 kb on - strand, within GFF3136 at 565.775 kb on + strand, within GFF3136 at 565.775 kb on + strand, within GFF3136 at 565.776 kb on - strand, within GFF3136 at 565.776 kb on - strand, within GFF3136 at 565.991 kb on + strand, within GFF3136 at 565.992 kb on - strand, within GFF3136 at 565.992 kb on - strand, within GFF3136 at 566.171 kb on + strand, within GFF3136 at 566.385 kb on - strand, within GFF3136 at 566.526 kb on - strand at 566.526 kb on - strand at 566.526 kb on - strand at 566.540 kb on + strand at 566.887 kb on + strand, within GFF3137 at 566.887 kb on + strand, within GFF3137 at 567.170 kb on + strand, within GFF3137 at 567.171 kb on - strand, within GFF3137 at 567.200 kb on + strand, within GFF3137 at 567.200 kb on + strand, within GFF3137 at 567.200 kb on + strand, within GFF3137 at 567.200 kb on + strand, within GFF3137 at 567.641 kb on + strand, within GFF3137 at 567.641 kb on + strand, within GFF3137 at 567.642 kb on - strand, within GFF3137 at 567.642 kb on - strand, within GFF3137 at 567.878 kb on + strand at 568.828 kb on - strand, within GFF3138
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 565,639 + GFF3136 0.10 +0.8 565,650 + GFF3136 0.11 -3.8 565,651 - GFF3136 0.12 -0.7 565,651 - GFF3136 0.12 +1.6 565,718 + GFF3136 0.18 +1.3 565,719 - GFF3136 0.18 -1.2 565,719 - GFF3136 0.18 -1.5 565,775 + GFF3136 0.24 +1.6 565,775 + GFF3136 0.24 -0.4 565,776 - GFF3136 0.24 +0.3 565,776 - GFF3136 0.24 -1.2 565,991 + GFF3136 0.46 +0.3 565,992 - GFF3136 0.46 -1.3 565,992 - GFF3136 0.46 +1.3 566,171 + GFF3136 0.64 -1.2 566,385 - GFF3136 0.86 +1.9 566,526 - -0.7 566,526 - +0.3 566,526 - +0.8 566,540 + +0.1 566,887 + GFF3137 0.24 -0.6 566,887 + GFF3137 0.24 -1.0 567,170 + GFF3137 0.43 -0.1 567,171 - GFF3137 0.43 -1.7 567,200 + GFF3137 0.45 +1.4 567,200 + GFF3137 0.45 +0.2 567,200 + GFF3137 0.45 -1.9 567,200 + GFF3137 0.45 -2.3 567,641 + GFF3137 0.75 -1.0 567,641 + GFF3137 0.75 -3.3 567,642 - GFF3137 0.75 -0.8 567,642 - GFF3137 0.75 -0.6 567,878 + +0.4 568,828 - GFF3138 0.31 -3.9
Or see this region's nucleotide sequence