Strain Fitness in Variovorax sp. SCN45 around GFF312

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF310 and GFF311 overlap by 4 nucleotidesGFF311 and GFF312 overlap by 1 nucleotidesGFF312 and GFF313 are separated by 47 nucleotidesGFF313 and GFF314 are separated by 19 nucleotides GFF310 - FIG025233: SAM-dependent methyltransferases, at 342,529 to 343,305 GFF310 GFF311 - Polysaccharide deacetylase, at 343,302 to 344,144 GFF311 GFF312 - FIG021862: membrane protein, exporter, at 344,144 to 346,486 GFF312 GFF313 - FIG027190: Putative transmembrane protein, at 346,534 to 347,133 GFF313 GFF314 - Acyltransferase, at 347,153 to 348,175 GFF314 Position (kb) 344 345 346 347Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 343.229 kb on + strandat 343.229 kb on + strandat 343.229 kb on + strandat 343.230 kb on - strandat 343.230 kb on - strandat 343.377 kb on + strandat 343.377 kb on + strandat 343.377 kb on + strandat 343.377 kb on + strandat 343.378 kb on - strandat 343.378 kb on - strandat 343.378 kb on - strandat 343.378 kb on - strandat 343.378 kb on - strandat 343.378 kb on - strandat 343.378 kb on - strandat 343.378 kb on - strandat 344.376 kb on + strandat 344.376 kb on + strandat 344.377 kb on - strandat 344.377 kb on - strandat 344.526 kb on + strand, within GFF312at 344.526 kb on + strand, within GFF312at 344.526 kb on + strand, within GFF312at 344.526 kb on + strand, within GFF312at 344.527 kb on - strand, within GFF312at 344.527 kb on - strand, within GFF312at 344.593 kb on - strand, within GFF312at 344.593 kb on - strand, within GFF312at 344.593 kb on - strand, within GFF312at 344.601 kb on + strand, within GFF312at 344.602 kb on - strand, within GFF312at 344.742 kb on + strand, within GFF312at 344.742 kb on + strand, within GFF312at 344.743 kb on - strand, within GFF312at 344.743 kb on - strand, within GFF312at 344.743 kb on - strand, within GFF312at 344.743 kb on - strand, within GFF312at 344.743 kb on - strand, within GFF312at 344.743 kb on - strand, within GFF312at 344.743 kb on - strand, within GFF312at 344.752 kb on + strand, within GFF312at 344.752 kb on + strand, within GFF312at 344.753 kb on - strand, within GFF312at 344.753 kb on - strand, within GFF312at 344.753 kb on - strand, within GFF312at 344.834 kb on + strand, within GFF312at 344.835 kb on - strand, within GFF312at 344.979 kb on + strand, within GFF312at 344.980 kb on - strand, within GFF312at 345.070 kb on - strand, within GFF312at 345.070 kb on - strand, within GFF312at 345.294 kb on + strand, within GFF312at 345.294 kb on + strand, within GFF312at 345.294 kb on + strand, within GFF312at 345.294 kb on + strand, within GFF312at 345.295 kb on - strand, within GFF312at 345.295 kb on - strand, within GFF312at 345.348 kb on + strand, within GFF312at 345.348 kb on + strand, within GFF312at 345.348 kb on + strand, within GFF312at 345.349 kb on - strand, within GFF312at 345.349 kb on - strand, within GFF312at 345.349 kb on - strand, within GFF312at 345.349 kb on - strand, within GFF312at 345.349 kb on - strand, within GFF312at 345.349 kb on - strand, within GFF312at 345.349 kb on - strand, within GFF312at 345.349 kb on - strand, within GFF312at 345.349 kb on - strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.549 kb on + strand, within GFF312at 345.550 kb on - strand, within GFF312at 345.550 kb on - strand, within GFF312at 345.550 kb on - strand, within GFF312at 345.550 kb on - strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.552 kb on + strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.553 kb on - strand, within GFF312at 345.561 kb on + strand, within GFF312at 345.561 kb on + strand, within GFF312at 345.562 kb on - strand, within GFF312at 345.562 kb on - strand, within GFF312at 345.867 kb on + strand, within GFF312at 345.868 kb on - strand, within GFF312at 346.173 kb on + strand, within GFF312at 346.173 kb on + strand, within GFF312at 346.174 kb on - strand, within GFF312at 346.775 kb on + strand, within GFF313at 346.775 kb on + strand, within GFF313at 346.776 kb on - strand, within GFF313at 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.199 kb on + strandat 347.200 kb on - strandat 347.200 kb on - strandat 347.200 kb on - strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.238 kb on + strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.239 kb on - strandat 347.332 kb on - strand, within GFF314at 347.332 kb on - strand, within GFF314at 347.349 kb on + strand, within GFF314

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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343,229 + -1.9
343,229 + +1.4
343,229 + +3.9
343,230 - -2.3
343,230 - -0.7
343,377 + +0.5
343,377 + +0.7
343,377 + +0.5
343,377 + +3.3
343,378 - -0.7
343,378 - -2.5
343,378 - -0.0
343,378 - +1.0
343,378 - -2.2
343,378 - +2.3
343,378 - -0.9
343,378 - -0.9
344,376 + -2.3
344,376 + +1.1
344,377 - +0.1
344,377 - +3.6
344,526 + GFF312 0.16 -0.9
344,526 + GFF312 0.16 +0.1
344,526 + GFF312 0.16 -0.7
344,526 + GFF312 0.16 +0.1
344,527 - GFF312 0.16 -1.5
344,527 - GFF312 0.16 -2.5
344,593 - GFF312 0.19 -1.4
344,593 - GFF312 0.19 -1.6
344,593 - GFF312 0.19 -4.0
344,601 + GFF312 0.20 +0.6
344,602 - GFF312 0.20 -2.9
344,742 + GFF312 0.26 +1.9
344,742 + GFF312 0.26 +1.9
344,743 - GFF312 0.26 -0.5
344,743 - GFF312 0.26 -1.7
344,743 - GFF312 0.26 -0.9
344,743 - GFF312 0.26 +1.3
344,743 - GFF312 0.26 +0.3
344,743 - GFF312 0.26 -2.0
344,743 - GFF312 0.26 -2.3
344,752 + GFF312 0.26 -1.1
344,752 + GFF312 0.26 -0.3
344,753 - GFF312 0.26 +0.0
344,753 - GFF312 0.26 -0.2
344,753 - GFF312 0.26 +0.8
344,834 + GFF312 0.29 -0.2
344,835 - GFF312 0.29 -0.7
344,979 + GFF312 0.36 +0.7
344,980 - GFF312 0.36 +0.3
345,070 - GFF312 0.40 -0.3
345,070 - GFF312 0.40 +0.1
345,294 + GFF312 0.49 -1.1
345,294 + GFF312 0.49 -0.3
345,294 + GFF312 0.49 +2.7
345,294 + GFF312 0.49 -0.9
345,295 - GFF312 0.49 -3.0
345,295 - GFF312 0.49 -0.3
345,348 + GFF312 0.51 -2.1
345,348 + GFF312 0.51 -1.6
345,348 + GFF312 0.51 -1.9
345,349 - GFF312 0.51 -1.6
345,349 - GFF312 0.51 +0.9
345,349 - GFF312 0.51 +0.9
345,349 - GFF312 0.51 +2.1
345,349 - GFF312 0.51 -2.6
345,349 - GFF312 0.51 -0.6
345,349 - GFF312 0.51 -3.0
345,349 - GFF312 0.51 -0.2
345,349 - GFF312 0.51 -1.7
345,549 + GFF312 0.60 -1.8
345,549 + GFF312 0.60 -0.4
345,549 + GFF312 0.60 -0.1
345,549 + GFF312 0.60 +1.7
345,549 + GFF312 0.60 +0.1
345,549 + GFF312 0.60 +0.7
345,549 + GFF312 0.60 -0.3
345,550 - GFF312 0.60 -1.7
345,550 - GFF312 0.60 -2.0
345,550 - GFF312 0.60 -2.2
345,550 - GFF312 0.60 -1.3
345,552 + GFF312 0.60 -1.1
345,552 + GFF312 0.60 +0.1
345,552 + GFF312 0.60 -0.4
345,552 + GFF312 0.60 +1.1
345,552 + GFF312 0.60 +0.5
345,552 + GFF312 0.60 -0.9
345,552 + GFF312 0.60 -0.8
345,552 + GFF312 0.60 +1.5
345,552 + GFF312 0.60 -2.2
345,552 + GFF312 0.60 +0.4
345,553 - GFF312 0.60 +0.7
345,553 - GFF312 0.60 -0.7
345,553 - GFF312 0.60 -1.1
345,553 - GFF312 0.60 +1.2
345,553 - GFF312 0.60 -1.0
345,553 - GFF312 0.60 -1.5
345,553 - GFF312 0.60 +1.1
345,553 - GFF312 0.60 -0.3
345,553 - GFF312 0.60 -0.9
345,553 - GFF312 0.60 -1.7
345,553 - GFF312 0.60 -0.9
345,553 - GFF312 0.60 -0.4
345,553 - GFF312 0.60 -1.3
345,553 - GFF312 0.60 -0.9
345,553 - GFF312 0.60 -0.3
345,561 + GFF312 0.60 -2.7
345,561 + GFF312 0.60 +1.7
345,562 - GFF312 0.61 -2.0
345,562 - GFF312 0.61 -1.7
345,867 + GFF312 0.74 +0.9
345,868 - GFF312 0.74 -1.5
346,173 + GFF312 0.87 +1.8
346,173 + GFF312 0.87 -2.6
346,174 - GFF312 0.87 -0.9
346,775 + GFF313 0.40 -0.5
346,775 + GFF313 0.40 -1.5
346,776 - GFF313 0.40 -1.7
347,199 + +0.4
347,199 + -2.1
347,199 + +0.7
347,199 + +0.3
347,199 + -0.7
347,199 + -1.3
347,200 - +2.0
347,200 - -1.1
347,200 - -2.2
347,238 + -2.7
347,238 + -0.5
347,238 + +1.9
347,238 + +0.5
347,238 + -2.1
347,238 + +0.9
347,238 + -1.1
347,239 - +1.3
347,239 - -0.6
347,239 - -1.4
347,239 - +0.8
347,239 - -0.4
347,239 - -1.1
347,239 - -0.9
347,239 - -0.9
347,239 - -1.3
347,239 - -0.7
347,332 - GFF314 0.17 -2.0
347,332 - GFF314 0.17 -0.7
347,349 + GFF314 0.19 -0.6

Or see this region's nucleotide sequence