Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3052 and GFF3053 overlap by 4 nucleotides GFF3053 and GFF3054 overlap by 4 nucleotides GFF3054 and GFF3055 are separated by 13 nucleotides GFF3055 and GFF3056 are separated by 63 nucleotides
GFF3052 - Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 486,386 to 487,369
GFF3052
GFF3053 - Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54), at 487,366 to 488,025
GFF3053
GFF3054 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 488,022 to 489,374
GFF3054
GFF3055 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 489,388 to 489,882
GFF3055
GFF3056 - Nitrogen assimilation regulatory protein Nac, at 489,946 to 490,917
GFF3056
Position (kb) 488
489
490 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 487.613 kb on + strand, within GFF3053 at 487.637 kb on + strand, within GFF3053 at 487.638 kb on - strand, within GFF3053 at 487.739 kb on + strand, within GFF3053 at 487.739 kb on + strand, within GFF3053 at 488.236 kb on + strand, within GFF3054 at 488.236 kb on + strand, within GFF3054 at 488.237 kb on - strand, within GFF3054 at 488.521 kb on + strand, within GFF3054 at 488.521 kb on + strand, within GFF3054 at 488.522 kb on - strand, within GFF3054 at 488.540 kb on - strand, within GFF3054 at 488.745 kb on + strand, within GFF3054 at 488.745 kb on + strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.780 kb on - strand, within GFF3054 at 488.780 kb on - strand, within GFF3054 at 488.780 kb on - strand, within GFF3054 at 489.253 kb on + strand at 489.253 kb on + strand at 489.254 kb on - strand at 489.947 kb on + strand at 489.947 kb on + strand at 489.948 kb on - strand at 490.295 kb on + strand, within GFF3056 at 490.295 kb on + strand, within GFF3056 at 490.296 kb on - strand, within GFF3056 at 490.296 kb on - strand, within GFF3056
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 487,613 + GFF3053 0.37 -1.0 487,637 + GFF3053 0.41 +1.9 487,638 - GFF3053 0.41 -0.0 487,739 + GFF3053 0.57 -3.1 487,739 + GFF3053 0.57 -0.9 488,236 + GFF3054 0.16 +0.1 488,236 + GFF3054 0.16 -1.7 488,237 - GFF3054 0.16 -0.9 488,521 + GFF3054 0.37 +0.5 488,521 + GFF3054 0.37 -2.2 488,522 - GFF3054 0.37 -0.3 488,540 - GFF3054 0.38 +1.5 488,745 + GFF3054 0.53 -0.2 488,745 + GFF3054 0.53 +0.9 488,746 - GFF3054 0.54 +0.1 488,746 - GFF3054 0.54 -1.7 488,746 - GFF3054 0.54 -2.3 488,746 - GFF3054 0.54 +1.7 488,780 - GFF3054 0.56 -0.7 488,780 - GFF3054 0.56 +0.4 488,780 - GFF3054 0.56 -0.4 489,253 + -3.5 489,253 + -1.1 489,254 - -0.7 489,947 + -4.1 489,947 + -3.8 489,948 - -2.9 490,295 + GFF3056 0.36 -2.4 490,295 + GFF3056 0.36 -1.9 490,296 - GFF3056 0.36 -1.1 490,296 - GFF3056 0.36 -0.9
Or see this region's nucleotide sequence