Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3047 and GFF3048 are separated by 21 nucleotides GFF3048 and GFF3049 are separated by 40 nucleotides GFF3049 and GFF3050 are separated by 166 nucleotides GFF3050 and GFF3051 are separated by 28 nucleotides
GFF3047 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 482,614 to 483,393
GFF3047
GFF3048 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 483,415 to 484,116
GFF3048
GFF3049 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 484,157 to 484,909
GFF3049
GFF3050 - Lactam utilization protein LamB, at 485,076 to 485,840
GFF3050
GFF3051 - no description, at 485,869 to 486,267
GFF3051
Position (kb) 484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 483.188 kb on + strand, within GFF3047 at 483.188 kb on + strand, within GFF3047 at 483.188 kb on + strand, within GFF3047 at 483.188 kb on + strand, within GFF3047 at 483.188 kb on + strand, within GFF3047 at 483.390 kb on - strand at 483.491 kb on + strand, within GFF3048 at 483.492 kb on - strand, within GFF3048 at 483.924 kb on - strand, within GFF3048 at 484.477 kb on - strand, within GFF3049 at 484.893 kb on + strand at 484.894 kb on - strand at 484.924 kb on + strand at 484.925 kb on - strand at 484.957 kb on + strand at 485.015 kb on + strand at 485.016 kb on - strand at 485.037 kb on + strand at 485.037 kb on + strand at 485.038 kb on - strand at 485.038 kb on - strand at 485.051 kb on - strand at 485.575 kb on + strand, within GFF3050 at 485.584 kb on + strand, within GFF3050 at 485.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 483,188 + GFF3047 0.74 -0.4 483,188 + GFF3047 0.74 +1.3 483,188 + GFF3047 0.74 -2.6 483,188 + GFF3047 0.74 +0.5 483,188 + GFF3047 0.74 +0.7 483,390 - +0.3 483,491 + GFF3048 0.11 -1.8 483,492 - GFF3048 0.11 -2.0 483,924 - GFF3048 0.73 +1.0 484,477 - GFF3049 0.42 +0.9 484,893 + +0.2 484,894 - -3.6 484,924 + -2.0 484,925 - +0.6 484,957 + +0.3 485,015 + +0.8 485,016 - -1.0 485,037 + +0.4 485,037 + +1.1 485,038 - -0.1 485,038 - +1.8 485,051 - -1.3 485,575 + GFF3050 0.65 +0.4 485,584 + GFF3050 0.66 +2.1 485,894 - -1.3
Or see this region's nucleotide sequence