Strain Fitness in Variovorax sp. SCN45 around GFF3041

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
474,459	+				-1.3
474,460	-				-4.5
474,664	-				+0.4
474,910	+		GFF3041	0.16	-0.4
475,406	-		GFF3041	0.59	-0.1
475,406	-		GFF3041	0.59	+0.2
475,406	-		GFF3041	0.59	+0.7
475,929	+				-3.1
475,930	-				-3.0
475,930	-				+2.4
475,964	+				-0.7
476,140	+				-2.2
476,140	+				+0.9
476,141	-				-1.7
476,141	-				+0.3
476,141	-				-0.1
476,141	-				-1.7
476,141	-				+0.3
476,161	-				-1.1
476,365	+		GFF3042	0.29	+0.1
476,365	+		GFF3042	0.29	-1.8
476,366	-		GFF3042	0.29	-0.8
476,428	+		GFF3042	0.37	-2.2
476,429	-		GFF3042	0.37	-1.7
476,617	+		GFF3042	0.61	-1.9
476,617	+		GFF3042	0.61	+0.2
476,698	+		GFF3042	0.72	+1.5
476,699	-		GFF3042	0.72	-0.7
476,699	-		GFF3042	0.72	+1.1
476,744	-		GFF3042	0.78	-0.6