Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3037 and GFF3038 are separated by 11 nucleotides GFF3038 and GFF3039 are separated by 250 nucleotides GFF3039 and GFF3040 are separated by 181 nucleotides
GFF3037 - no description, at 470,012 to 470,479
GFF3037
GFF3038 - hypothetical protein, at 470,491 to 471,174
GFF3038
GFF3039 - Two-component transcriptional response regulator, LuxR family, at 471,425 to 472,204
GFF3039
GFF3040 - hypothetical protein, at 472,386 to 474,662
GFF3040
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 470.812 kb on + strand, within GFF3038 at 470.848 kb on + strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.988 kb on - strand, within GFF3038 at 471.465 kb on + strand at 471.466 kb on - strand at 471.466 kb on - strand at 471.466 kb on - strand at 471.741 kb on + strand, within GFF3039 at 471.876 kb on + strand, within GFF3039 at 471.876 kb on + strand, within GFF3039 at 471.877 kb on - strand, within GFF3039 at 471.877 kb on - strand, within GFF3039 at 472.032 kb on + strand, within GFF3039 at 472.204 kb on + strand at 472.204 kb on + strand at 472.205 kb on - strand at 472.258 kb on - strand at 473.135 kb on + strand, within GFF3040 at 473.135 kb on + strand, within GFF3040 at 473.135 kb on + strand, within GFF3040
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 470,812 + GFF3038 0.47 +0.7 470,848 + GFF3038 0.52 +0.2 470,950 - GFF3038 0.67 -3.6 470,950 - GFF3038 0.67 +0.2 470,950 - GFF3038 0.67 +0.2 470,988 - GFF3038 0.73 -0.4 471,465 + +0.6 471,466 - -1.3 471,466 - +0.1 471,466 - -2.6 471,741 + GFF3039 0.41 +1.4 471,876 + GFF3039 0.58 -0.5 471,876 + GFF3039 0.58 +1.5 471,877 - GFF3039 0.58 -0.4 471,877 - GFF3039 0.58 +0.3 472,032 + GFF3039 0.78 -0.1 472,204 + -1.1 472,204 + -2.9 472,205 - +0.4 472,258 - -0.9 473,135 + GFF3040 0.33 -2.2 473,135 + GFF3040 0.33 +1.5 473,135 + GFF3040 0.33 +1.4
Or see this region's nucleotide sequence