Strain Fitness in Variovorax sp. SCN45 around GFF299

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF297 and GFF298 overlap by 4 nucleotidesGFF298 and GFF299 overlap by 4 nucleotidesGFF299 and GFF300 overlap by 1 nucleotidesGFF300 and GFF301 overlap by 4 nucleotides GFF297 - FIG00978250: hypothetical protein, at 331,787 to 332,500 GFF297 GFF298 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177), at 332,497 to 332,964 GFF298 GFF299 - Ribosomal silencing factor RsfA, at 332,961 to 333,647 GFF299 GFF300 - Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 333,647 to 334,279 GFF300 GFF301 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 334,276 to 335,193 GFF301 Position (kb) 332 333 334Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.105 kb on + strand, within GFF297at 332.106 kb on - strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.150 kb on - strand, within GFF297at 332.150 kb on - strand, within GFF297at 332.454 kb on + strandat 332.454 kb on + strandat 332.454 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.511 kb on - strandat 332.511 kb on - strandat 332.511 kb on - strandat 332.511 kb on - strandat 332.543 kb on + strandat 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.897 kb on + strand, within GFF298at 332.897 kb on + strand, within GFF298at 332.898 kb on - strand, within GFF298at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.552 kb on + strand, within GFF299at 333.553 kb on - strand, within GFF299at 333.553 kb on - strand, within GFF299at 333.661 kb on - strandat 333.678 kb on + strandat 333.679 kb on + strandat 333.679 kb on + strandat 333.680 kb on - strandat 333.680 kb on - strandat 333.680 kb on - strandat 333.680 kb on - strandat 333.680 kb on - strandat 333.680 kb on - strandat 333.681 kb on + strandat 333.766 kb on + strand, within GFF300at 333.766 kb on + strand, within GFF300at 333.766 kb on + strand, within GFF300at 333.767 kb on - strand, within GFF300

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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332,095 + GFF297 0.43 -1.2
332,095 + GFF297 0.43 +0.1
332,095 + GFF297 0.43 -1.6
332,095 + GFF297 0.43 +2.1
332,095 + GFF297 0.43 +0.5
332,096 - GFF297 0.43 -1.0
332,096 - GFF297 0.43 +0.1
332,096 - GFF297 0.43 -0.3
332,105 + GFF297 0.45 -3.1
332,106 - GFF297 0.45 +0.8
332,148 + GFF297 0.51 -1.4
332,148 + GFF297 0.51 -1.1
332,148 + GFF297 0.51 +0.3
332,148 + GFF297 0.51 +0.5
332,148 + GFF297 0.51 -3.1
332,148 + GFF297 0.51 -0.2
332,148 + GFF297 0.51 -0.6
332,148 + GFF297 0.51 -0.3
332,148 + GFF297 0.51 +0.4
332,148 + GFF297 0.51 +0.1
332,148 + GFF297 0.51 +0.6
332,149 - GFF297 0.51 -2.1
332,149 - GFF297 0.51 +1.7
332,149 - GFF297 0.51 -2.2
332,149 - GFF297 0.51 -1.8
332,150 - GFF297 0.51 +0.1
332,150 - GFF297 0.51 +0.4
332,454 + +1.2
332,454 + +0.1
332,454 + -1.9
332,510 + -0.6
332,510 + -1.6
332,510 + +3.6
332,510 + -0.9
332,510 + +0.7
332,511 - -1.0
332,511 - -1.0
332,511 - -2.5
332,511 - +1.3
332,543 + -1.8
332,810 + GFF298 0.67 -1.8
332,810 + GFF298 0.67 -0.7
332,810 + GFF298 0.67 +0.0
332,810 + GFF298 0.67 -0.9
332,810 + GFF298 0.67 -0.1
332,810 + GFF298 0.67 +2.3
332,810 + GFF298 0.67 -3.3
332,811 - GFF298 0.67 +3.3
332,811 - GFF298 0.67 +2.3
332,811 - GFF298 0.67 +0.1
332,811 - GFF298 0.67 -0.8
332,897 + GFF298 0.85 -0.7
332,897 + GFF298 0.85 +3.1
332,898 - GFF298 0.86 +1.2
333,331 + GFF299 0.54 -1.8
333,331 + GFF299 0.54 -2.6
333,331 + GFF299 0.54 +0.0
333,331 + GFF299 0.54 -1.6
333,331 + GFF299 0.54 -2.1
333,331 + GFF299 0.54 -0.6
333,331 + GFF299 0.54 +0.8
333,331 + GFF299 0.54 +2.4
333,331 + GFF299 0.54 +0.2
333,331 + GFF299 0.54 -1.5
333,331 + GFF299 0.54 -0.8
333,331 + GFF299 0.54 +1.6
333,331 + GFF299 0.54 -4.7
333,331 + GFF299 0.54 -1.9
333,332 - GFF299 0.54 +1.0
333,332 - GFF299 0.54 +0.4
333,332 - GFF299 0.54 -1.1
333,332 - GFF299 0.54 -2.4
333,332 - GFF299 0.54 -1.3
333,332 - GFF299 0.54 -2.0
333,332 - GFF299 0.54 -1.9
333,332 - GFF299 0.54 -0.6
333,332 - GFF299 0.54 -1.9
333,332 - GFF299 0.54 -0.1
333,332 - GFF299 0.54 -3.3
333,332 - GFF299 0.54 +0.1
333,334 + GFF299 0.54 +0.1
333,334 + GFF299 0.54 +0.6
333,334 + GFF299 0.54 -3.4
333,334 + GFF299 0.54 -1.1
333,334 + GFF299 0.54 -1.3
333,334 + GFF299 0.54 -3.3
333,334 + GFF299 0.54 -0.6
333,334 + GFF299 0.54 +0.7
333,335 - GFF299 0.54 -2.0
333,335 - GFF299 0.54 -2.1
333,335 - GFF299 0.54 -2.2
333,335 - GFF299 0.54 -1.1
333,335 - GFF299 0.54 +1.3
333,552 + GFF299 0.86 -3.1
333,553 - GFF299 0.86 -3.1
333,553 - GFF299 0.86 -1.8
333,661 - -0.7
333,678 + -2.7
333,679 + -1.1
333,679 + +1.7
333,680 - -4.3
333,680 - +0.1
333,680 - -0.6
333,680 - -3.4
333,680 - -2.4
333,680 - -3.0
333,681 + +1.7
333,766 + GFF300 0.19 +0.1
333,766 + GFF300 0.19 -0.6
333,766 + GFF300 0.19 -0.3
333,767 - GFF300 0.19 -1.3

Or see this region's nucleotide sequence