Strain Fitness in Variovorax sp. SCN45 around GFF2902

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2901 and GFF2903 overlap by 4 nucleotidesGFF2903 and GFF2902 overlap by 6 nucleotidesGFF2902 and GFF2904 are separated by 106 nucleotides GFF2901 - FIG00347713: hypothetical protein, at 327,089 to 328,222 GFF2901 GFF2903 - no description, at 328,219 to 328,338 GFF2903 GFF2902 - ABC transporter, substrate-binding protein (cluster 13, osmolytes) / ABC transporter, permease protein (cluster 13, osmolytes), at 328,333 to 329,859 GFF2902 GFF2904 - hypothetical protein, at 329,966 to 330,697 GFF2904 Position (kb) 328 329 330Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 327.454 kb on - strand, within GFF2901at 327.649 kb on - strand, within GFF2901at 327.649 kb on - strand, within GFF2901at 328.119 kb on + strandat 328.119 kb on + strandat 328.283 kb on - strand, within GFF2903at 328.297 kb on + strand, within GFF2903at 328.318 kb on + strand, within GFF2903at 328.320 kb on + strand, within GFF2903at 328.320 kb on + strand, within GFF2903at 328.320 kb on + strand, within GFF2903at 328.320 kb on + strand, within GFF2903at 328.320 kb on + strand, within GFF2903at 328.321 kb on - strand, within GFF2903at 328.321 kb on - strand, within GFF2903at 328.459 kb on + strandat 328.459 kb on + strandat 328.459 kb on + strandat 328.459 kb on + strandat 328.459 kb on + strandat 328.460 kb on - strandat 328.552 kb on + strand, within GFF2902at 328.552 kb on + strand, within GFF2902at 328.552 kb on + strand, within GFF2902at 328.553 kb on - strand, within GFF2902at 328.553 kb on - strand, within GFF2902at 328.585 kb on + strand, within GFF2902at 328.594 kb on + strand, within GFF2902at 328.717 kb on + strand, within GFF2902at 328.717 kb on + strand, within GFF2902at 328.907 kb on - strand, within GFF2902at 328.907 kb on - strand, within GFF2902at 328.941 kb on - strand, within GFF2902at 328.948 kb on + strand, within GFF2902at 328.948 kb on + strand, within GFF2902at 328.948 kb on + strand, within GFF2902at 328.948 kb on + strand, within GFF2902at 328.948 kb on + strand, within GFF2902at 328.949 kb on - strand, within GFF2902at 328.949 kb on - strand, within GFF2902at 328.949 kb on - strand, within GFF2902at 329.008 kb on + strand, within GFF2902at 329.008 kb on + strand, within GFF2902at 329.009 kb on - strand, within GFF2902at 329.009 kb on - strand, within GFF2902at 329.020 kb on + strand, within GFF2902at 329.021 kb on - strand, within GFF2902at 329.038 kb on + strand, within GFF2902at 329.038 kb on + strand, within GFF2902at 329.038 kb on + strand, within GFF2902at 329.038 kb on + strand, within GFF2902at 329.039 kb on - strand, within GFF2902at 329.039 kb on - strand, within GFF2902at 329.313 kb on - strand, within GFF2902at 329.313 kb on - strand, within GFF2902at 329.313 kb on - strand, within GFF2902at 329.402 kb on + strand, within GFF2902at 329.402 kb on + strand, within GFF2902at 329.403 kb on - strand, within GFF2902at 329.486 kb on - strand, within GFF2902at 329.486 kb on - strand, within GFF2902at 329.858 kb on - strandat 329.858 kb on - strandat 329.919 kb on + strandat 329.920 kb on - strandat 329.998 kb on - strandat 329.998 kb on - strandat 330.072 kb on - strand, within GFF2904at 330.119 kb on + strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.159 kb on - strand, within GFF2904at 330.159 kb on - strand, within GFF2904at 330.170 kb on + strand, within GFF2904at 330.171 kb on - strand, within GFF2904at 330.171 kb on - strand, within GFF2904at 330.392 kb on + strand, within GFF2904at 330.425 kb on + strand, within GFF2904at 330.555 kb on - strand, within GFF2904at 330.555 kb on - strand, within GFF2904at 330.695 kb on + strandat 330.794 kb on - strandat 330.799 kb on + strandat 330.799 kb on + strandat 330.799 kb on + strandat 330.799 kb on + strandat 330.800 kb on - strandat 330.800 kb on - strandat 330.803 kb on + strandat 330.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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327,454 - GFF2901 0.32 -0.6
327,649 - GFF2901 0.49 -1.7
327,649 - GFF2901 0.49 -2.1
328,119 + -1.9
328,119 + -2.4
328,283 - GFF2903 0.53 +0.8
328,297 + GFF2903 0.65 -1.3
328,318 + GFF2903 0.82 -0.5
328,320 + GFF2903 0.84 +0.9
328,320 + GFF2903 0.84 +0.6
328,320 + GFF2903 0.84 -2.5
328,320 + GFF2903 0.84 -2.2
328,320 + GFF2903 0.84 -3.2
328,321 - GFF2903 0.85 -1.4
328,321 - GFF2903 0.85 -0.8
328,459 + +3.7
328,459 + -2.3
328,459 + -2.0
328,459 + -0.8
328,459 + +0.6
328,460 - -1.5
328,552 + GFF2902 0.14 -0.1
328,552 + GFF2902 0.14 +1.9
328,552 + GFF2902 0.14 -1.8
328,553 - GFF2902 0.14 -0.7
328,553 - GFF2902 0.14 -3.2
328,585 + GFF2902 0.17 -4.4
328,594 + GFF2902 0.17 +0.6
328,717 + GFF2902 0.25 -3.5
328,717 + GFF2902 0.25 -0.9
328,907 - GFF2902 0.38 -2.9
328,907 - GFF2902 0.38 +0.2
328,941 - GFF2902 0.40 -2.2
328,948 + GFF2902 0.40 +0.1
328,948 + GFF2902 0.40 -1.1
328,948 + GFF2902 0.40 -3.2
328,948 + GFF2902 0.40 -0.8
328,948 + GFF2902 0.40 -0.4
328,949 - GFF2902 0.40 -1.0
328,949 - GFF2902 0.40 +1.9
328,949 - GFF2902 0.40 -1.5
329,008 + GFF2902 0.44 +0.4
329,008 + GFF2902 0.44 -0.1
329,009 - GFF2902 0.44 -1.6
329,009 - GFF2902 0.44 +0.3
329,020 + GFF2902 0.45 -1.0
329,021 - GFF2902 0.45 +0.2
329,038 + GFF2902 0.46 -1.7
329,038 + GFF2902 0.46 -1.3
329,038 + GFF2902 0.46 +0.6
329,038 + GFF2902 0.46 +0.8
329,039 - GFF2902 0.46 -1.3
329,039 - GFF2902 0.46 -0.9
329,313 - GFF2902 0.64 -0.2
329,313 - GFF2902 0.64 -0.4
329,313 - GFF2902 0.64 +1.3
329,402 + GFF2902 0.70 -0.2
329,402 + GFF2902 0.70 -0.1
329,403 - GFF2902 0.70 +0.9
329,486 - GFF2902 0.76 -0.5
329,486 - GFF2902 0.76 -0.6
329,858 - -1.4
329,858 - +0.7
329,919 + -3.2
329,920 - +0.2
329,998 - -3.4
329,998 - -1.4
330,072 - GFF2904 0.14 -0.2
330,119 + GFF2904 0.21 -0.8
330,120 - GFF2904 0.21 +1.0
330,120 - GFF2904 0.21 +1.1
330,120 - GFF2904 0.21 -0.1
330,120 - GFF2904 0.21 -1.5
330,158 + GFF2904 0.26 -1.1
330,158 + GFF2904 0.26 +0.1
330,158 + GFF2904 0.26 -0.9
330,158 + GFF2904 0.26 -2.5
330,158 + GFF2904 0.26 -0.2
330,158 + GFF2904 0.26 -0.1
330,158 + GFF2904 0.26 +0.2
330,159 - GFF2904 0.26 -1.3
330,159 - GFF2904 0.26 +1.0
330,170 + GFF2904 0.28 +0.3
330,171 - GFF2904 0.28 -1.3
330,171 - GFF2904 0.28 +1.2
330,392 + GFF2904 0.58 -0.8
330,425 + GFF2904 0.63 -1.8
330,555 - GFF2904 0.80 -0.4
330,555 - GFF2904 0.80 +0.2
330,695 + -0.6
330,794 - -0.5
330,799 + -3.4
330,799 + -1.0
330,799 + -1.2
330,799 + +0.1
330,800 - -0.8
330,800 - +1.2
330,803 + -2.2
330,804 - +1.5

Or see this region's nucleotide sequence