Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2865 and GFF2866 are separated by 112 nucleotides GFF2866 and GFF2867 overlap by 4 nucleotides
GFF2865 - Uncharacterized MFS-type transporter, at 287,982 to 289,511
GFF2865
GFF2866 - Uncharacterized MFS-type transporter, at 289,624 to 290,787
GFF2866
GFF2867 - DNA recombination protein RmuC, at 290,784 to 292,151
GFF2867
Position (kb) 289
290
291 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 288.655 kb on + strand, within GFF2865 at 288.655 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.881 kb on + strand, within GFF2865 at 288.881 kb on + strand, within GFF2865 at 288.881 kb on + strand, within GFF2865 at 288.882 kb on - strand, within GFF2865 at 288.882 kb on - strand, within GFF2865 at 288.882 kb on - strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.447 kb on + strand at 289.447 kb on + strand at 289.447 kb on + strand at 289.447 kb on + strand at 289.448 kb on - strand at 289.448 kb on - strand at 289.448 kb on - strand at 289.499 kb on + strand at 289.499 kb on + strand at 289.499 kb on + strand at 289.499 kb on + strand at 289.500 kb on - strand at 289.500 kb on - strand at 289.500 kb on - strand at 289.500 kb on - strand at 289.546 kb on - strand at 289.546 kb on - strand at 289.563 kb on + strand at 289.564 kb on - strand at 289.564 kb on - strand at 289.564 kb on - strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.910 kb on + strand, within GFF2866 at 289.910 kb on + strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 290.681 kb on + strand at 290.681 kb on + strand at 290.681 kb on + strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.682 kb on - strand at 290.965 kb on + strand, within GFF2867 at 290.966 kb on - strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.157 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.217 kb on + strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.218 kb on - strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.328 kb on + strand, within GFF2867 at 291.457 kb on + strand, within GFF2867 at 291.457 kb on + strand, within GFF2867
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 288,655 + GFF2865 0.44 -2.5 288,655 + GFF2865 0.44 +1.2 288,853 + GFF2865 0.57 -0.7 288,853 + GFF2865 0.57 -1.1 288,853 + GFF2865 0.57 +1.5 288,853 + GFF2865 0.57 -2.5 288,853 + GFF2865 0.57 +1.6 288,853 + GFF2865 0.57 -0.9 288,853 + GFF2865 0.57 -0.1 288,853 + GFF2865 0.57 +0.4 288,854 - GFF2865 0.57 -1.3 288,854 - GFF2865 0.57 +0.2 288,854 - GFF2865 0.57 +1.6 288,854 - GFF2865 0.57 -3.4 288,881 + GFF2865 0.59 -1.8 288,881 + GFF2865 0.59 -3.2 288,881 + GFF2865 0.59 +0.6 288,882 - GFF2865 0.59 +0.7 288,882 - GFF2865 0.59 +0.3 288,882 - GFF2865 0.59 +0.9 289,279 + GFF2865 0.85 +1.3 289,279 + GFF2865 0.85 +0.7 289,279 + GFF2865 0.85 -1.2 289,279 + GFF2865 0.85 -1.9 289,279 + GFF2865 0.85 +1.8 289,279 + GFF2865 0.85 +2.2 289,280 - GFF2865 0.85 +0.7 289,280 - GFF2865 0.85 -0.1 289,280 - GFF2865 0.85 +1.8 289,280 - GFF2865 0.85 -2.5 289,280 - GFF2865 0.85 -2.7 289,333 + GFF2865 0.88 +3.1 289,333 + GFF2865 0.88 -1.5 289,333 + GFF2865 0.88 -0.1 289,333 + GFF2865 0.88 -1.7 289,334 - GFF2865 0.88 -0.4 289,334 - GFF2865 0.88 -0.9 289,334 - GFF2865 0.88 -1.2 289,334 - GFF2865 0.88 +1.6 289,334 - GFF2865 0.88 -1.8 289,334 - GFF2865 0.88 -4.7 289,447 + -1.3 289,447 + -0.1 289,447 + +0.5 289,447 + +1.9 289,448 - +0.1 289,448 - -0.9 289,448 - -0.4 289,499 + -1.2 289,499 + -0.0 289,499 + -1.8 289,499 + +0.7 289,500 - -0.8 289,500 - -0.1 289,500 - +0.3 289,500 - -2.4 289,546 - +0.8 289,546 - -0.6 289,563 + -1.3 289,564 - -3.7 289,564 - -0.7 289,564 - +0.5 289,644 + -0.4 289,644 + -1.4 289,644 + -1.3 289,644 + +1.7 289,644 + -0.4 289,644 + -1.0 289,644 + -0.7 289,644 + -3.0 289,644 + -0.1 289,644 + +0.1 289,645 - -0.9 289,645 - +0.6 289,645 - -2.4 289,645 - -2.5 289,645 - +0.1 289,910 + GFF2866 0.25 -0.6 289,910 + GFF2866 0.25 +2.1 289,911 - GFF2866 0.25 +0.3 289,911 - GFF2866 0.25 +0.8 289,911 - GFF2866 0.25 -1.1 290,681 + +0.2 290,681 + -0.3 290,681 + +1.6 290,682 - -0.2 290,682 - -1.9 290,682 - -0.7 290,682 - -0.1 290,682 - +0.9 290,682 - -0.7 290,965 + GFF2867 0.13 -1.9 290,966 - GFF2867 0.13 +3.5 291,157 + GFF2867 0.27 -1.1 291,157 + GFF2867 0.27 -2.2 291,157 + GFF2867 0.27 -0.7 291,157 + GFF2867 0.27 -1.4 291,217 + GFF2867 0.32 -1.8 291,217 + GFF2867 0.32 -0.2 291,217 + GFF2867 0.32 -2.3 291,217 + GFF2867 0.32 -2.1 291,218 - GFF2867 0.32 +0.9 291,218 - GFF2867 0.32 +0.1 291,218 - GFF2867 0.32 -0.6 291,218 - GFF2867 0.32 +0.9 291,218 - GFF2867 0.32 -1.4 291,218 - GFF2867 0.32 -0.0 291,328 + GFF2867 0.40 -0.1 291,328 + GFF2867 0.40 +1.0 291,328 + GFF2867 0.40 -0.6 291,328 + GFF2867 0.40 +0.9 291,457 + GFF2867 0.49 -1.6 291,457 + GFF2867 0.49 -1.6
Or see this region's nucleotide sequence