Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2857 and GFF2858 overlap by 4 nucleotides GFF2858 and GFF2859 are separated by 60 nucleotides GFF2859 and GFF2860 are separated by 93 nucleotides
GFF2857 - Permease of the drug/metabolite transporter (DMT) superfamily, at 280,423 to 281,310
GFF2857
GFF2858 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5), at 281,307 to 281,873
GFF2858
GFF2859 - Excinuclease ABC subunit C, at 281,934 to 283,901
GFF2859
GFF2860 - FIG00974036: hypothetical protein, at 283,995 to 285,065
GFF2860
Position (kb) 281
282
283
284 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 281.051 kb on + strand, within GFF2857 at 281.168 kb on + strand, within GFF2857 at 281.169 kb on - strand, within GFF2857 at 281.169 kb on - strand, within GFF2857 at 281.201 kb on + strand, within GFF2857 at 281.201 kb on + strand, within GFF2857 at 281.201 kb on + strand, within GFF2857 at 281.202 kb on - strand, within GFF2857 at 281.315 kb on + strand at 281.316 kb on - strand at 281.316 kb on - strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 282.083 kb on + strand at 282.083 kb on + strand at 282.211 kb on + strand, within GFF2859 at 282.211 kb on + strand, within GFF2859 at 282.211 kb on + strand, within GFF2859 at 282.212 kb on - strand, within GFF2859 at 282.212 kb on - strand, within GFF2859 at 282.485 kb on - strand, within GFF2859 at 282.517 kb on + strand, within GFF2859 at 282.518 kb on - strand, within GFF2859 at 282.550 kb on + strand, within GFF2859 at 282.550 kb on + strand, within GFF2859 at 282.550 kb on + strand, within GFF2859 at 282.550 kb on + strand, within GFF2859 at 282.551 kb on - strand, within GFF2859 at 282.559 kb on + strand, within GFF2859 at 282.559 kb on + strand, within GFF2859 at 282.560 kb on - strand, within GFF2859 at 282.560 kb on - strand, within GFF2859 at 282.585 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 283.052 kb on - strand, within GFF2859 at 283.336 kb on + strand, within GFF2859 at 283.336 kb on + strand, within GFF2859 at 283.336 kb on + strand, within GFF2859 at 283.336 kb on + strand, within GFF2859 at 283.337 kb on - strand, within GFF2859 at 283.337 kb on - strand, within GFF2859 at 283.390 kb on + strand, within GFF2859 at 283.391 kb on - strand, within GFF2859 at 283.391 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.513 kb on + strand, within GFF2859 at 283.514 kb on - strand, within GFF2859 at 283.544 kb on - strand, within GFF2859 at 283.544 kb on - strand, within GFF2859 at 283.544 kb on - strand, within GFF2859 at 283.546 kb on + strand, within GFF2859 at 283.546 kb on + strand, within GFF2859 at 283.546 kb on + strand, within GFF2859 at 283.546 kb on + strand, within GFF2859 at 283.546 kb on + strand, within GFF2859 at 283.585 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.622 kb on - strand, within GFF2859 at 283.622 kb on - strand, within GFF2859 at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.760 kb on - strand at 283.760 kb on - strand at 283.760 kb on - strand at 283.760 kb on - strand at 283.760 kb on - strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.828 kb on + strand at 283.829 kb on - strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.835 kb on - strand at 283.835 kb on - strand at 283.835 kb on - strand at 283.908 kb on + strand at 283.909 kb on - strand at 283.909 kb on - strand at 283.909 kb on - strand at 283.909 kb on - strand at 283.994 kb on + strand at 283.994 kb on + strand at 283.994 kb on + strand at 283.994 kb on + strand at 283.994 kb on + strand at 283.994 kb on + strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 281,051 + GFF2857 0.71 +0.1 281,168 + GFF2857 0.84 +0.4 281,169 - GFF2857 0.84 +0.2 281,169 - GFF2857 0.84 -3.4 281,201 + GFF2857 0.88 -0.7 281,201 + GFF2857 0.88 -0.4 281,201 + GFF2857 0.88 -0.3 281,202 - GFF2857 0.88 -0.7 281,315 + +1.9 281,316 - +0.5 281,316 - +1.4 281,950 + -1.9 281,950 + -0.7 281,950 + +1.7 281,950 + +0.7 281,950 + -1.9 281,950 + -0.4 281,950 + -1.3 281,950 + +0.1 281,951 - -1.4 281,951 - -1.0 281,951 - +1.2 281,951 - -0.9 281,951 - -1.0 281,951 - -2.3 281,951 - +0.9 281,951 - +0.9 281,951 - -2.6 281,951 - +3.1 281,951 - -1.9 281,951 - -0.9 281,951 - -1.5 281,951 - -0.3 281,951 - -3.6 282,083 + +0.5 282,083 + -1.3 282,211 + GFF2859 0.14 -3.7 282,211 + GFF2859 0.14 +0.2 282,211 + GFF2859 0.14 -0.1 282,212 - GFF2859 0.14 -2.9 282,212 - GFF2859 0.14 -0.1 282,485 - GFF2859 0.28 -1.3 282,517 + GFF2859 0.30 +1.0 282,518 - GFF2859 0.30 +4.0 282,550 + GFF2859 0.31 +1.0 282,550 + GFF2859 0.31 -3.7 282,550 + GFF2859 0.31 -1.9 282,550 + GFF2859 0.31 -3.7 282,551 - GFF2859 0.31 -0.1 282,559 + GFF2859 0.32 +1.9 282,559 + GFF2859 0.32 -1.1 282,560 - GFF2859 0.32 -0.7 282,560 - GFF2859 0.32 -0.9 282,585 + GFF2859 0.33 -1.1 282,916 + GFF2859 0.50 +0.3 282,916 + GFF2859 0.50 -0.3 282,916 + GFF2859 0.50 +0.2 282,916 + GFF2859 0.50 -1.9 282,916 + GFF2859 0.50 -1.3 282,916 + GFF2859 0.50 -0.1 282,916 + GFF2859 0.50 -0.1 282,917 - GFF2859 0.50 -2.9 282,917 - GFF2859 0.50 -0.9 282,917 - GFF2859 0.50 +0.4 282,917 - GFF2859 0.50 -0.9 282,917 - GFF2859 0.50 +0.7 282,917 - GFF2859 0.50 -2.9 282,917 - GFF2859 0.50 -1.4 283,052 - GFF2859 0.57 +2.4 283,336 + GFF2859 0.71 +1.1 283,336 + GFF2859 0.71 +0.6 283,336 + GFF2859 0.71 -1.1 283,336 + GFF2859 0.71 +2.1 283,337 - GFF2859 0.71 -3.7 283,337 - GFF2859 0.71 -0.7 283,390 + GFF2859 0.74 +1.7 283,391 - GFF2859 0.74 +1.9 283,391 - GFF2859 0.74 +0.3 283,421 - GFF2859 0.76 -0.7 283,421 - GFF2859 0.76 -1.4 283,421 - GFF2859 0.76 +2.6 283,421 - GFF2859 0.76 +0.1 283,421 - GFF2859 0.76 -2.5 283,421 - GFF2859 0.76 -1.1 283,513 + GFF2859 0.80 -2.3 283,514 - GFF2859 0.80 +0.3 283,544 - GFF2859 0.82 -2.7 283,544 - GFF2859 0.82 +0.7 283,544 - GFF2859 0.82 -0.9 283,546 + GFF2859 0.82 +0.9 283,546 + GFF2859 0.82 +2.8 283,546 + GFF2859 0.82 -0.8 283,546 + GFF2859 0.82 +0.1 283,546 + GFF2859 0.82 +0.5 283,585 + GFF2859 0.84 -2.4 283,591 + GFF2859 0.84 -1.9 283,591 + GFF2859 0.84 -1.8 283,591 + GFF2859 0.84 -1.7 283,591 + GFF2859 0.84 +1.9 283,591 + GFF2859 0.84 +0.4 283,591 + GFF2859 0.84 -1.0 283,592 - GFF2859 0.84 +1.9 283,592 - GFF2859 0.84 -2.8 283,592 - GFF2859 0.84 -2.0 283,592 - GFF2859 0.84 +1.4 283,592 - GFF2859 0.84 +1.2 283,592 - GFF2859 0.84 -1.5 283,621 + GFF2859 0.86 -0.7 283,621 + GFF2859 0.86 -0.3 283,621 + GFF2859 0.86 -2.7 283,621 + GFF2859 0.86 -0.3 283,621 + GFF2859 0.86 -0.9 283,621 + GFF2859 0.86 -0.4 283,621 + GFF2859 0.86 +0.7 283,621 + GFF2859 0.86 +0.1 283,622 - GFF2859 0.86 -0.1 283,622 - GFF2859 0.86 +0.1 283,759 + -0.0 283,759 + -1.3 283,759 + -0.1 283,759 + +0.4 283,759 + +0.8 283,759 + -1.9 283,759 + -0.4 283,759 + +0.3 283,759 + +0.1 283,760 - -2.3 283,760 - -2.8 283,760 - +0.1 283,760 - -0.3 283,760 - +0.3 283,801 + -2.0 283,801 + -0.9 283,801 + -1.7 283,801 + -1.8 283,801 + -1.5 283,801 + -1.4 283,801 + +0.4 283,802 - -0.1 283,802 - -2.2 283,802 - -0.5 283,802 - -0.6 283,802 - -0.7 283,802 - +0.9 283,802 - -0.1 283,828 + +1.9 283,829 - +0.5 283,834 + -1.5 283,834 + -0.5 283,834 + +1.7 283,834 + -0.9 283,834 + +0.5 283,834 + -1.8 283,834 + -1.4 283,834 + -1.6 283,835 - -2.1 283,835 - -0.6 283,835 - +0.5 283,908 + -3.0 283,909 - +0.8 283,909 - +3.3 283,909 - -2.7 283,909 - +0.9 283,994 + -0.7 283,994 + +0.6 283,994 + +0.1 283,994 + +0.3 283,994 + +0.9 283,994 + +1.5 283,995 - -1.8 283,995 - -1.1 283,995 - +0.2 283,995 - -2.7 283,995 - -0.9 283,995 - -0.7 283,995 - -0.4 283,995 - -1.2 283,995 - -1.9 283,995 - -3.5 283,995 - -1.8
Or see this region's nucleotide sequence