Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF283 and GFF284 are separated by 31 nucleotides GFF284 and GFF285 are separated by 45 nucleotides GFF285 and GFF286 are separated by 111 nucleotides
GFF283 - no description, at 318,130 to 319,224
GFF283
GFF284 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 319,256 to 320,149
GFF284
GFF285 - no description, at 320,195 to 321,037
GFF285
GFF286 - Transcriptional regulator, LysR family, at 321,149 to 322,042
GFF286
Position (kb) 320
321
322 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 319.257 kb on + strand at 319.257 kb on + strand at 319.257 kb on + strand at 319.258 kb on - strand at 319.391 kb on - strand, within GFF284 at 319.470 kb on + strand, within GFF284 at 319.470 kb on + strand, within GFF284 at 319.470 kb on + strand, within GFF284 at 319.471 kb on - strand, within GFF284 at 319.471 kb on - strand, within GFF284 at 319.471 kb on - strand, within GFF284 at 319.590 kb on + strand, within GFF284 at 319.590 kb on + strand, within GFF284 at 319.590 kb on + strand, within GFF284 at 319.590 kb on + strand, within GFF284 at 319.590 kb on + strand, within GFF284 at 319.590 kb on + strand, within GFF284 at 319.590 kb on + strand, within GFF284 at 319.590 kb on + strand, within GFF284 at 319.591 kb on - strand, within GFF284 at 319.591 kb on - strand, within GFF284 at 319.591 kb on - strand, within GFF284 at 319.591 kb on - strand, within GFF284 at 319.591 kb on - strand, within GFF284 at 319.669 kb on + strand, within GFF284 at 319.671 kb on + strand, within GFF284 at 319.671 kb on + strand, within GFF284 at 319.672 kb on - strand, within GFF284 at 319.672 kb on - strand, within GFF284 at 319.672 kb on - strand, within GFF284 at 319.704 kb on - strand, within GFF284 at 319.704 kb on - strand, within GFF284 at 319.704 kb on - strand, within GFF284 at 319.725 kb on + strand, within GFF284 at 319.725 kb on + strand, within GFF284 at 319.725 kb on + strand, within GFF284 at 319.725 kb on + strand, within GFF284 at 319.725 kb on + strand, within GFF284 at 319.725 kb on + strand, within GFF284 at 319.725 kb on + strand, within GFF284 at 319.725 kb on + strand, within GFF284 at 319.725 kb on + strand, within GFF284 at 319.725 kb on + strand, within GFF284 at 319.726 kb on - strand, within GFF284 at 319.726 kb on - strand, within GFF284 at 319.726 kb on - strand, within GFF284 at 319.726 kb on - strand, within GFF284 at 319.726 kb on - strand, within GFF284 at 319.726 kb on - strand, within GFF284 at 319.726 kb on - strand, within GFF284 at 319.726 kb on - strand, within GFF284 at 319.826 kb on - strand, within GFF284 at 319.911 kb on + strand, within GFF284 at 319.911 kb on + strand, within GFF284 at 319.911 kb on + strand, within GFF284 at 319.912 kb on - strand, within GFF284 at 319.912 kb on - strand, within GFF284 at 319.912 kb on - strand, within GFF284 at 319.912 kb on - strand, within GFF284 at 319.912 kb on - strand, within GFF284 at 319.912 kb on - strand, within GFF284 at 319.936 kb on - strand, within GFF284 at 319.936 kb on - strand, within GFF284 at 320.001 kb on + strand, within GFF284 at 320.001 kb on + strand, within GFF284 at 320.001 kb on + strand, within GFF284 at 320.001 kb on + strand, within GFF284 at 320.001 kb on + strand, within GFF284 at 320.002 kb on - strand, within GFF284 at 320.002 kb on - strand, within GFF284 at 320.002 kb on - strand, within GFF284 at 320.002 kb on - strand, within GFF284 at 320.210 kb on - strand at 320.340 kb on + strand, within GFF285 at 320.340 kb on + strand, within GFF285 at 320.341 kb on - strand, within GFF285 at 320.772 kb on + strand, within GFF285 at 320.773 kb on - strand, within GFF285 at 320.773 kb on - strand, within GFF285 at 320.773 kb on - strand, within GFF285 at 320.773 kb on - strand, within GFF285 at 321.052 kb on + strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.085 kb on + strand at 321.085 kb on + strand at 321.085 kb on + strand at 321.085 kb on + strand at 321.085 kb on + strand at 321.085 kb on + strand at 321.086 kb on - strand at 321.086 kb on - strand at 321.086 kb on - strand at 321.170 kb on + strand at 321.170 kb on + strand at 321.171 kb on - strand at 321.171 kb on - strand at 321.171 kb on - strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.282 kb on + strand, within GFF286 at 321.282 kb on + strand, within GFF286 at 321.282 kb on + strand, within GFF286 at 321.282 kb on + strand, within GFF286 at 321.283 kb on - strand, within GFF286 at 321.283 kb on - strand, within GFF286 at 321.314 kb on + strand, within GFF286 at 321.314 kb on + strand, within GFF286 at 321.314 kb on + strand, within GFF286 at 321.314 kb on + strand, within GFF286 at 321.488 kb on + strand, within GFF286 at 321.489 kb on - strand, within GFF286 at 321.489 kb on - strand, within GFF286 at 321.489 kb on - strand, within GFF286 at 321.490 kb on - strand, within GFF286 at 321.638 kb on + strand, within GFF286 at 321.638 kb on + strand, within GFF286 at 321.638 kb on + strand, within GFF286 at 321.639 kb on - strand, within GFF286 at 321.764 kb on + strand, within GFF286 at 321.765 kb on - strand, within GFF286 at 321.923 kb on + strand, within GFF286 at 321.923 kb on + strand, within GFF286 at 321.923 kb on + strand, within GFF286 at 321.924 kb on - strand, within GFF286 at 321.924 kb on - strand, within GFF286 at 321.924 kb on - strand, within GFF286 at 321.962 kb on + strand at 321.962 kb on + strand at 321.962 kb on + strand at 321.963 kb on - strand at 321.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 319,257 + -0.1 319,257 + +0.7 319,257 + +1.3 319,258 - -2.3 319,391 - GFF284 0.15 +0.3 319,470 + GFF284 0.24 +3.0 319,470 + GFF284 0.24 -0.6 319,470 + GFF284 0.24 -2.3 319,471 - GFF284 0.24 -1.3 319,471 - GFF284 0.24 -1.5 319,471 - GFF284 0.24 -0.6 319,590 + GFF284 0.37 +1.5 319,590 + GFF284 0.37 -2.6 319,590 + GFF284 0.37 -0.9 319,590 + GFF284 0.37 -1.3 319,590 + GFF284 0.37 +0.1 319,590 + GFF284 0.37 -2.1 319,590 + GFF284 0.37 -2.6 319,590 + GFF284 0.37 -0.6 319,591 - GFF284 0.37 +0.0 319,591 - GFF284 0.37 -2.2 319,591 - GFF284 0.37 -0.5 319,591 - GFF284 0.37 +0.8 319,591 - GFF284 0.37 -0.4 319,669 + GFF284 0.46 -1.1 319,671 + GFF284 0.46 -1.1 319,671 + GFF284 0.46 +0.7 319,672 - GFF284 0.47 +1.5 319,672 - GFF284 0.47 -1.1 319,672 - GFF284 0.47 -2.1 319,704 - GFF284 0.50 -1.6 319,704 - GFF284 0.50 -2.5 319,704 - GFF284 0.50 -1.3 319,725 + GFF284 0.52 +1.4 319,725 + GFF284 0.52 +0.3 319,725 + GFF284 0.52 -1.9 319,725 + GFF284 0.52 +0.3 319,725 + GFF284 0.52 -0.8 319,725 + GFF284 0.52 +2.2 319,725 + GFF284 0.52 -1.0 319,725 + GFF284 0.52 +1.0 319,725 + GFF284 0.52 -2.3 319,725 + GFF284 0.52 +0.9 319,726 - GFF284 0.53 +1.7 319,726 - GFF284 0.53 +1.4 319,726 - GFF284 0.53 -0.0 319,726 - GFF284 0.53 -0.6 319,726 - GFF284 0.53 +1.4 319,726 - GFF284 0.53 +2.4 319,726 - GFF284 0.53 -2.3 319,726 - GFF284 0.53 -3.1 319,826 - GFF284 0.64 -0.9 319,911 + GFF284 0.73 +0.7 319,911 + GFF284 0.73 +0.2 319,911 + GFF284 0.73 -0.9 319,912 - GFF284 0.73 +0.7 319,912 - GFF284 0.73 +0.4 319,912 - GFF284 0.73 -1.5 319,912 - GFF284 0.73 +1.2 319,912 - GFF284 0.73 -0.3 319,912 - GFF284 0.73 -0.9 319,936 - GFF284 0.76 +0.1 319,936 - GFF284 0.76 -1.3 320,001 + GFF284 0.83 +0.9 320,001 + GFF284 0.83 +1.0 320,001 + GFF284 0.83 +0.1 320,001 + GFF284 0.83 -3.3 320,001 + GFF284 0.83 -2.1 320,002 - GFF284 0.83 -0.6 320,002 - GFF284 0.83 -0.7 320,002 - GFF284 0.83 +0.9 320,002 - GFF284 0.83 -4.2 320,210 - +2.0 320,340 + GFF285 0.17 -0.3 320,340 + GFF285 0.17 +1.7 320,341 - GFF285 0.17 -0.3 320,772 + GFF285 0.68 -0.4 320,773 - GFF285 0.69 -1.7 320,773 - GFF285 0.69 +0.3 320,773 - GFF285 0.69 -1.6 320,773 - GFF285 0.69 +2.6 321,052 + +0.9 321,053 - +1.1 321,053 - -1.8 321,053 - +0.0 321,053 - -2.0 321,053 - +0.1 321,053 - +0.1 321,053 - -0.1 321,085 + -1.3 321,085 + -1.3 321,085 + -1.3 321,085 + -1.0 321,085 + +0.7 321,085 + +1.0 321,086 - -1.6 321,086 - +1.8 321,086 - -0.0 321,170 + +2.5 321,170 + -0.3 321,171 - -2.3 321,171 - -0.6 321,171 - -1.1 321,224 + +2.0 321,224 + +0.7 321,224 + -2.4 321,224 + -0.2 321,224 + -1.3 321,224 + +1.7 321,224 + +1.0 321,225 - -1.5 321,225 - -0.3 321,225 - +0.3 321,225 - -1.1 321,225 - -1.1 321,225 - +0.1 321,225 - +0.1 321,225 - -3.8 321,225 - -2.8 321,282 + GFF286 0.15 +0.9 321,282 + GFF286 0.15 +1.3 321,282 + GFF286 0.15 -0.3 321,282 + GFF286 0.15 -3.0 321,283 - GFF286 0.15 -0.6 321,283 - GFF286 0.15 -4.0 321,314 + GFF286 0.18 -3.2 321,314 + GFF286 0.18 +1.7 321,314 + GFF286 0.18 -1.3 321,314 + GFF286 0.18 -0.2 321,488 + GFF286 0.38 -1.5 321,489 - GFF286 0.38 -0.6 321,489 - GFF286 0.38 -0.9 321,489 - GFF286 0.38 -3.1 321,490 - GFF286 0.38 -0.3 321,638 + GFF286 0.55 -1.1 321,638 + GFF286 0.55 -0.3 321,638 + GFF286 0.55 -2.0 321,639 - GFF286 0.55 -2.8 321,764 + GFF286 0.69 -1.1 321,765 - GFF286 0.69 +0.7 321,923 + GFF286 0.87 +0.1 321,923 + GFF286 0.87 +0.3 321,923 + GFF286 0.87 -0.6 321,924 - GFF286 0.87 -0.7 321,924 - GFF286 0.87 -0.3 321,924 - GFF286 0.87 -0.5 321,962 + +1.2 321,962 + -1.8 321,962 + +1.2 321,963 - -0.3 321,963 - +0.7
Or see this region's nucleotide sequence