Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2821 and GFF2822 overlap by 4 nucleotides GFF2822 and GFF2823 overlap by 4 nucleotides
GFF2821 - Hemin ABC transporter, permease protein, at 247,704 to 248,738
GFF2821
GFF2822 - Periplasmic hemin-binding protein, at 248,735 to 249,634
GFF2822
GFF2823 - Hemin transport protein HmuS, at 249,631 to 250,731
GFF2823
Position (kb) 248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 247.817 kb on + strand, within GFF2821 at 248.302 kb on + strand, within GFF2821 at 248.302 kb on + strand, within GFF2821 at 248.302 kb on + strand, within GFF2821 at 248.303 kb on - strand, within GFF2821 at 248.303 kb on - strand, within GFF2821 at 248.303 kb on - strand, within GFF2821 at 248.303 kb on - strand, within GFF2821 at 248.647 kb on + strand at 248.647 kb on + strand at 248.647 kb on + strand at 248.647 kb on + strand at 248.647 kb on + strand at 248.647 kb on + strand at 248.647 kb on + strand at 248.648 kb on - strand at 248.648 kb on - strand at 248.648 kb on - strand at 248.648 kb on - strand at 249.019 kb on - strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.381 kb on + strand, within GFF2822 at 249.382 kb on - strand, within GFF2822 at 249.382 kb on - strand, within GFF2822 at 249.382 kb on - strand, within GFF2822 at 249.382 kb on - strand, within GFF2822 at 249.418 kb on - strand, within GFF2822 at 249.468 kb on + strand, within GFF2822 at 249.468 kb on + strand, within GFF2822 at 249.468 kb on + strand, within GFF2822 at 249.468 kb on + strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.469 kb on - strand, within GFF2822 at 249.584 kb on + strand at 249.584 kb on + strand at 249.584 kb on + strand at 249.584 kb on + strand at 249.584 kb on + strand at 249.585 kb on - strand at 249.585 kb on - strand at 249.585 kb on - strand at 249.585 kb on - strand at 249.585 kb on - strand at 250.478 kb on + strand, within GFF2823 at 250.478 kb on + strand, within GFF2823 at 250.478 kb on + strand, within GFF2823 at 250.479 kb on - strand, within GFF2823
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 247,817 + GFF2821 0.11 -0.4 248,302 + GFF2821 0.58 +0.8 248,302 + GFF2821 0.58 +0.5 248,302 + GFF2821 0.58 -1.4 248,303 - GFF2821 0.58 -2.1 248,303 - GFF2821 0.58 +0.8 248,303 - GFF2821 0.58 -1.5 248,303 - GFF2821 0.58 -0.4 248,647 + +1.3 248,647 + -1.5 248,647 + -1.5 248,647 + +1.1 248,647 + -0.7 248,647 + -0.2 248,647 + +1.0 248,648 - -1.0 248,648 - -0.6 248,648 - -1.5 248,648 - +0.1 249,019 - GFF2822 0.32 +1.9 249,381 + GFF2822 0.72 -1.7 249,381 + GFF2822 0.72 +1.0 249,381 + GFF2822 0.72 -0.9 249,381 + GFF2822 0.72 -0.7 249,381 + GFF2822 0.72 +2.1 249,381 + GFF2822 0.72 -1.3 249,381 + GFF2822 0.72 -0.3 249,381 + GFF2822 0.72 -1.5 249,381 + GFF2822 0.72 -1.7 249,382 - GFF2822 0.72 -2.3 249,382 - GFF2822 0.72 +1.6 249,382 - GFF2822 0.72 -1.2 249,382 - GFF2822 0.72 -0.7 249,418 - GFF2822 0.76 +0.0 249,468 + GFF2822 0.81 -0.1 249,468 + GFF2822 0.81 -3.4 249,468 + GFF2822 0.81 +0.1 249,468 + GFF2822 0.81 +1.9 249,469 - GFF2822 0.82 -1.8 249,469 - GFF2822 0.82 +4.0 249,469 - GFF2822 0.82 -2.2 249,469 - GFF2822 0.82 -0.3 249,469 - GFF2822 0.82 +1.8 249,469 - GFF2822 0.82 +3.1 249,584 + -0.6 249,584 + -0.5 249,584 + -0.4 249,584 + -0.2 249,584 + +0.8 249,585 - +1.7 249,585 - -1.8 249,585 - -0.7 249,585 - +0.1 249,585 - -0.8 250,478 + GFF2823 0.77 -0.3 250,478 + GFF2823 0.77 -2.1 250,478 + GFF2823 0.77 +0.5 250,479 - GFF2823 0.77 -2.3
Or see this region's nucleotide sequence