Strain Fitness in Variovorax sp. SCN45 around GFF2791

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2790 and GFF2791 are separated by 116 nucleotidesGFF2791 and GFF2792 are separated by 6 nucleotides GFF2790 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 219,707 to 220,891 GFF2790 GFF2791 - hypothetical protein, at 221,008 to 221,343 GFF2791 GFF2792 - Chaperone protein ClpB (ATP-dependent unfoldase), at 221,350 to 223,971 GFF2792 Position (kb) 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.053 kb on + strand, within GFF2790at 220.054 kb on - strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.495 kb on - strand, within GFF2790at 220.495 kb on - strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.693 kb on - strand, within GFF2790at 220.996 kb on + strandat 220.997 kb on - strandat 220.997 kb on - strandat 221.237 kb on + strand, within GFF2791at 221.238 kb on - strand, within GFF2791at 221.333 kb on - strandat 221.351 kb on + strandat 221.352 kb on - strandat 221.661 kb on + strand, within GFF2792at 221.661 kb on + strand, within GFF2792at 221.662 kb on - strand, within GFF2792at 221.662 kb on - strand, within GFF2792at 221.723 kb on + strand, within GFF2792at 221.723 kb on + strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.982 kb on - strand, within GFF2792at 221.996 kb on + strand, within GFF2792at 221.997 kb on - strand, within GFF2792at 222.005 kb on + strand, within GFF2792at 222.005 kb on + strand, within GFF2792at 222.005 kb on + strand, within GFF2792

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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220,026 + GFF2790 0.27 -1.9
220,026 + GFF2790 0.27 -2.3
220,026 + GFF2790 0.27 -0.1
220,026 + GFF2790 0.27 +0.6
220,026 + GFF2790 0.27 -0.7
220,026 + GFF2790 0.27 -1.1
220,026 + GFF2790 0.27 -2.0
220,026 + GFF2790 0.27 +1.0
220,026 + GFF2790 0.27 -1.4
220,027 - GFF2790 0.27 +4.0
220,027 - GFF2790 0.27 +0.4
220,027 - GFF2790 0.27 +0.2
220,027 - GFF2790 0.27 -1.7
220,027 - GFF2790 0.27 -1.8
220,027 - GFF2790 0.27 -3.2
220,027 - GFF2790 0.27 -0.2
220,027 - GFF2790 0.27 -0.6
220,027 - GFF2790 0.27 +0.9
220,027 - GFF2790 0.27 +0.8
220,027 - GFF2790 0.27 +0.2
220,027 - GFF2790 0.27 -0.9
220,027 - GFF2790 0.27 +0.2
220,027 - GFF2790 0.27 -1.4
220,027 - GFF2790 0.27 -2.3
220,027 - GFF2790 0.27 -1.5
220,053 + GFF2790 0.29 -0.3
220,054 - GFF2790 0.29 -1.8
220,383 + GFF2790 0.57 -0.4
220,383 + GFF2790 0.57 +1.7
220,383 + GFF2790 0.57 +0.4
220,384 - GFF2790 0.57 +0.7
220,384 - GFF2790 0.57 -2.1
220,384 - GFF2790 0.57 -0.9
220,458 + GFF2790 0.63 -0.7
220,458 + GFF2790 0.63 -0.2
220,458 + GFF2790 0.63 -1.3
220,458 + GFF2790 0.63 -0.1
220,459 - GFF2790 0.63 +2.0
220,459 - GFF2790 0.63 -2.4
220,459 - GFF2790 0.63 +3.6
220,459 - GFF2790 0.63 -0.1
220,459 - GFF2790 0.63 -0.7
220,495 - GFF2790 0.66 -0.1
220,495 - GFF2790 0.66 -0.2
220,515 + GFF2790 0.68 -3.5
220,515 + GFF2790 0.68 -1.0
220,515 + GFF2790 0.68 +2.6
220,692 + GFF2790 0.83 -1.4
220,692 + GFF2790 0.83 -0.6
220,692 + GFF2790 0.83 -2.2
220,693 - GFF2790 0.83 -2.5
220,996 + +0.1
220,997 - -0.7
220,997 - -0.6
221,237 + GFF2791 0.68 +0.9
221,238 - GFF2791 0.68 +0.1
221,333 - +1.8
221,351 + +0.8
221,352 - -0.4
221,661 + GFF2792 0.12 +0.3
221,661 + GFF2792 0.12 +1.6
221,662 - GFF2792 0.12 +0.5
221,662 - GFF2792 0.12 +0.5
221,723 + GFF2792 0.14 -2.0
221,723 + GFF2792 0.14 +0.5
221,724 - GFF2792 0.14 -1.1
221,724 - GFF2792 0.14 +0.3
221,724 - GFF2792 0.14 -2.7
221,724 - GFF2792 0.14 -0.2
221,724 - GFF2792 0.14 +1.6
221,982 - GFF2792 0.24 +1.1
221,996 + GFF2792 0.25 -1.4
221,997 - GFF2792 0.25 -3.3
222,005 + GFF2792 0.25 -2.3
222,005 + GFF2792 0.25 +0.7
222,005 + GFF2792 0.25 +1.1

Or see this region's nucleotide sequence