Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2663 and GFF2664 overlap by 4 nucleotides GFF2664 and GFF2665 are separated by 18 nucleotides GFF2665 and GFF2666 are separated by 71 nucleotides
GFF2663 - FIG022979: MoxR-like ATPases, at 85,580 to 86,500
GFF2663
GFF2664 - FIG002343: hypothetical protein, at 86,497 to 87,474
GFF2664
GFF2665 - FIG001454: Transglutaminase-like enzymes, putative cysteine proteases, at 87,493 to 89,514
GFF2665
GFF2666 - Membrane-bound lytic murein transglycosylase B, at 89,586 to 90,668
GFF2666
Position (kb) 87
88
89
90 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 86.593 kb on + strand at 86.593 kb on + strand at 86.593 kb on + strand at 86.593 kb on + strand at 86.594 kb on - strand at 86.594 kb on - strand at 86.666 kb on - strand, within GFF2664 at 86.684 kb on - strand, within GFF2664 at 86.684 kb on - strand, within GFF2664 at 86.848 kb on + strand, within GFF2664 at 86.849 kb on - strand, within GFF2664 at 87.053 kb on - strand, within GFF2664 at 87.727 kb on + strand, within GFF2665 at 87.727 kb on + strand, within GFF2665 at 87.727 kb on + strand, within GFF2665 at 87.728 kb on - strand, within GFF2665 at 87.878 kb on - strand, within GFF2665 at 87.878 kb on - strand, within GFF2665 at 88.219 kb on + strand, within GFF2665 at 88.219 kb on + strand, within GFF2665 at 88.220 kb on - strand, within GFF2665 at 88.337 kb on - strand, within GFF2665 at 88.337 kb on - strand, within GFF2665 at 88.498 kb on + strand, within GFF2665 at 88.498 kb on + strand, within GFF2665 at 88.498 kb on + strand, within GFF2665 at 88.499 kb on - strand, within GFF2665 at 88.552 kb on + strand, within GFF2665 at 88.552 kb on + strand, within GFF2665 at 88.553 kb on - strand, within GFF2665 at 88.688 kb on - strand, within GFF2665 at 88.693 kb on + strand, within GFF2665 at 88.693 kb on + strand, within GFF2665 at 88.694 kb on - strand, within GFF2665 at 88.694 kb on - strand, within GFF2665 at 88.694 kb on - strand, within GFF2665 at 88.871 kb on - strand, within GFF2665 at 88.871 kb on - strand, within GFF2665 at 88.871 kb on - strand, within GFF2665 at 88.871 kb on - strand, within GFF2665 at 89.113 kb on + strand, within GFF2665 at 89.113 kb on + strand, within GFF2665 at 89.113 kb on + strand, within GFF2665 at 89.114 kb on - strand, within GFF2665 at 89.186 kb on - strand, within GFF2665 at 89.186 kb on - strand, within GFF2665 at 89.186 kb on - strand, within GFF2665 at 89.186 kb on - strand, within GFF2665 at 89.197 kb on + strand, within GFF2665 at 89.198 kb on - strand, within GFF2665 at 89.429 kb on - strand at 89.653 kb on + strand at 89.654 kb on - strand at 89.654 kb on - strand at 89.654 kb on - strand at 89.654 kb on - strand at 89.716 kb on - strand, within GFF2666 at 89.881 kb on - strand, within GFF2666 at 89.973 kb on + strand, within GFF2666 at 89.974 kb on - strand, within GFF2666 at 90.024 kb on + strand, within GFF2666 at 90.024 kb on + strand, within GFF2666 at 90.024 kb on + strand, within GFF2666 at 90.024 kb on + strand, within GFF2666 at 90.024 kb on + strand, within GFF2666 at 90.024 kb on + strand, within GFF2666 at 90.024 kb on + strand, within GFF2666 at 90.024 kb on + strand, within GFF2666 at 90.024 kb on + strand, within GFF2666 at 90.025 kb on - strand, within GFF2666 at 90.025 kb on - strand, within GFF2666 at 90.025 kb on - strand, within GFF2666 at 90.202 kb on - strand, within GFF2666 at 90.202 kb on - strand, within GFF2666 at 90.252 kb on + strand, within GFF2666 at 90.252 kb on + strand, within GFF2666 at 90.330 kb on + strand, within GFF2666 at 90.330 kb on + strand, within GFF2666 at 90.330 kb on + strand, within GFF2666 at 90.373 kb on - strand, within GFF2666 at 90.373 kb on - strand, within GFF2666
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 86,593 + +0.7 86,593 + -1.8 86,593 + +2.3 86,593 + +2.4 86,594 - +0.9 86,594 - -0.2 86,666 - GFF2664 0.17 -1.7 86,684 - GFF2664 0.19 +4.8 86,684 - GFF2664 0.19 +0.6 86,848 + GFF2664 0.36 +2.6 86,849 - GFF2664 0.36 -0.2 87,053 - GFF2664 0.57 -0.8 87,727 + GFF2665 0.12 -1.3 87,727 + GFF2665 0.12 -1.6 87,727 + GFF2665 0.12 +1.5 87,728 - GFF2665 0.12 -3.8 87,878 - GFF2665 0.19 -1.7 87,878 - GFF2665 0.19 -1.6 88,219 + GFF2665 0.36 -0.2 88,219 + GFF2665 0.36 +1.5 88,220 - GFF2665 0.36 -1.1 88,337 - GFF2665 0.42 +0.2 88,337 - GFF2665 0.42 -0.3 88,498 + GFF2665 0.50 +1.5 88,498 + GFF2665 0.50 +0.8 88,498 + GFF2665 0.50 -1.4 88,499 - GFF2665 0.50 +0.3 88,552 + GFF2665 0.52 +2.2 88,552 + GFF2665 0.52 +3.2 88,553 - GFF2665 0.52 -0.1 88,688 - GFF2665 0.59 -0.2 88,693 + GFF2665 0.59 -3.3 88,693 + GFF2665 0.59 -0.7 88,694 - GFF2665 0.59 +1.1 88,694 - GFF2665 0.59 -2.6 88,694 - GFF2665 0.59 -3.5 88,871 - GFF2665 0.68 +0.8 88,871 - GFF2665 0.68 -0.4 88,871 - GFF2665 0.68 -1.0 88,871 - GFF2665 0.68 +0.0 89,113 + GFF2665 0.80 +0.7 89,113 + GFF2665 0.80 -0.1 89,113 + GFF2665 0.80 +3.0 89,114 - GFF2665 0.80 -0.2 89,186 - GFF2665 0.84 -3.0 89,186 - GFF2665 0.84 +0.9 89,186 - GFF2665 0.84 -0.4 89,186 - GFF2665 0.84 -1.6 89,197 + GFF2665 0.84 -1.8 89,198 - GFF2665 0.84 +1.6 89,429 - -0.4 89,653 + +1.0 89,654 - +1.6 89,654 - -3.4 89,654 - -2.4 89,654 - -1.8 89,716 - GFF2666 0.12 -1.1 89,881 - GFF2666 0.27 -2.2 89,973 + GFF2666 0.36 -1.7 89,974 - GFF2666 0.36 -2.1 90,024 + GFF2666 0.40 -0.1 90,024 + GFF2666 0.40 -1.4 90,024 + GFF2666 0.40 -1.4 90,024 + GFF2666 0.40 -1.3 90,024 + GFF2666 0.40 +0.3 90,024 + GFF2666 0.40 -1.9 90,024 + GFF2666 0.40 -2.1 90,024 + GFF2666 0.40 -4.4 90,024 + GFF2666 0.40 -0.4 90,025 - GFF2666 0.41 -0.5 90,025 - GFF2666 0.41 -0.4 90,025 - GFF2666 0.41 +1.8 90,202 - GFF2666 0.57 -0.9 90,202 - GFF2666 0.57 +0.6 90,252 + GFF2666 0.61 -0.6 90,252 + GFF2666 0.61 +1.6 90,330 + GFF2666 0.69 -2.0 90,330 + GFF2666 0.69 +0.8 90,330 + GFF2666 0.69 -1.1 90,373 - GFF2666 0.73 -0.8 90,373 - GFF2666 0.73 -0.6
Or see this region's nucleotide sequence