Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2658 and GFF2659 are separated by 74 nucleotides GFF2659 and GFF2660 are separated by 2 nucleotides GFF2660 and GFF2661 are separated by 136 nucleotides
GFF2658 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 79,547 to 81,337
GFF2658
GFF2659 - Electron transfer flavoprotein, alpha subunit, at 81,412 to 82,344
GFF2659
GFF2660 - Electron transfer flavoprotein, beta subunit, at 82,347 to 83,096
GFF2660
GFF2661 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 83,233 to 84,513
GFF2661
Position (kb) 81
82
83 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 80.446 kb on - strand, within GFF2658 at 80.475 kb on + strand, within GFF2658 at 80.475 kb on + strand, within GFF2658 at 80.475 kb on + strand, within GFF2658 at 80.475 kb on + strand, within GFF2658 at 80.476 kb on - strand, within GFF2658 at 80.476 kb on - strand, within GFF2658 at 80.476 kb on - strand, within GFF2658 at 80.476 kb on - strand, within GFF2658 at 80.509 kb on - strand, within GFF2658 at 80.745 kb on + strand, within GFF2658 at 80.745 kb on + strand, within GFF2658 at 80.746 kb on - strand, within GFF2658 at 80.746 kb on - strand, within GFF2658 at 80.746 kb on - strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.778 kb on + strand, within GFF2658 at 80.779 kb on - strand, within GFF2658 at 80.779 kb on - strand, within GFF2658 at 80.779 kb on - strand, within GFF2658 at 80.779 kb on - strand, within GFF2658 at 80.779 kb on - strand, within GFF2658 at 81.087 kb on + strand, within GFF2658 at 81.087 kb on + strand, within GFF2658 at 81.088 kb on - strand, within GFF2658 at 81.088 kb on - strand, within GFF2658 at 81.088 kb on - strand, within GFF2658 at 81.088 kb on - strand, within GFF2658 at 81.330 kb on + strand at 81.330 kb on + strand at 81.331 kb on - strand at 81.331 kb on - strand at 81.352 kb on + strand at 81.352 kb on + strand at 81.352 kb on + strand at 81.353 kb on - strand at 81.638 kb on + strand, within GFF2659 at 81.638 kb on + strand, within GFF2659 at 82.094 kb on + strand, within GFF2659 at 82.094 kb on + strand, within GFF2659 at 82.094 kb on + strand, within GFF2659 at 83.151 kb on + strand at 83.152 kb on - strand at 83.152 kb on - strand at 83.152 kb on - strand at 83.152 kb on - strand at 83.234 kb on + strand at 83.234 kb on + strand at 83.234 kb on + strand at 83.236 kb on + strand at 83.236 kb on + strand at 83.236 kb on + strand at 83.237 kb on - strand at 83.237 kb on - strand at 83.237 kb on - strand at 83.237 kb on - strand at 83.310 kb on + strand at 83.310 kb on + strand at 83.310 kb on + strand at 83.311 kb on - strand at 83.311 kb on - strand at 83.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 80,446 - GFF2658 0.50 -2.9 80,475 + GFF2658 0.52 -0.5 80,475 + GFF2658 0.52 +2.9 80,475 + GFF2658 0.52 -3.3 80,475 + GFF2658 0.52 -1.4 80,476 - GFF2658 0.52 -3.8 80,476 - GFF2658 0.52 -1.0 80,476 - GFF2658 0.52 -2.0 80,476 - GFF2658 0.52 -1.3 80,509 - GFF2658 0.54 +0.3 80,745 + GFF2658 0.67 -0.7 80,745 + GFF2658 0.67 -0.4 80,746 - GFF2658 0.67 -1.8 80,746 - GFF2658 0.67 +0.8 80,746 - GFF2658 0.67 +1.3 80,778 + GFF2658 0.69 -0.0 80,778 + GFF2658 0.69 -0.7 80,778 + GFF2658 0.69 -3.2 80,778 + GFF2658 0.69 -0.9 80,778 + GFF2658 0.69 -1.3 80,778 + GFF2658 0.69 +1.9 80,778 + GFF2658 0.69 -1.8 80,778 + GFF2658 0.69 -3.1 80,778 + GFF2658 0.69 -1.8 80,778 + GFF2658 0.69 +0.2 80,778 + GFF2658 0.69 -0.9 80,779 - GFF2658 0.69 +0.4 80,779 - GFF2658 0.69 -1.7 80,779 - GFF2658 0.69 +1.2 80,779 - GFF2658 0.69 -2.2 80,779 - GFF2658 0.69 +1.9 81,087 + GFF2658 0.86 +1.6 81,087 + GFF2658 0.86 -2.4 81,088 - GFF2658 0.86 -2.0 81,088 - GFF2658 0.86 -2.2 81,088 - GFF2658 0.86 -0.9 81,088 - GFF2658 0.86 -1.1 81,330 + -2.6 81,330 + +3.5 81,331 - -0.7 81,331 - +1.4 81,352 + -1.5 81,352 + +0.2 81,352 + +0.9 81,353 - +1.0 81,638 + GFF2659 0.24 -1.9 81,638 + GFF2659 0.24 -0.4 82,094 + GFF2659 0.73 -2.0 82,094 + GFF2659 0.73 -0.1 82,094 + GFF2659 0.73 -1.7 83,151 + -1.9 83,152 - -2.7 83,152 - +0.8 83,152 - -1.3 83,152 - -0.9 83,234 + +1.0 83,234 + -1.6 83,234 + -3.5 83,236 + +0.3 83,236 + -2.4 83,236 + +1.0 83,237 - +1.0 83,237 - -1.6 83,237 - +2.0 83,237 - -0.7 83,310 + -0.6 83,310 + -1.6 83,310 + -0.8 83,311 - -2.4 83,311 - -0.8 83,311 - +0.9
Or see this region's nucleotide sequence