Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2635 and GFF2636 overlap by 17 nucleotides GFF2636 and GFF2637 overlap by 4 nucleotides GFF2637 and GFF2638 overlap by 4 nucleotides
GFF2635 - hypothetical protein, at 45,996 to 48,956
GFF2635
GFF2636 - hypothetical protein, at 48,940 to 50,802
GFF2636
GFF2637 - no description, at 50,799 to 51,251
GFF2637
GFF2638 - Putative 2-component regulator, at 51,248 to 52,372
GFF2638
Position (kb) 48
49
50
51 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 48.244 kb on + strand, within GFF2635 at 48.245 kb on - strand, within GFF2635 at 48.313 kb on - strand, within GFF2635 at 48.313 kb on - strand, within GFF2635 at 48.313 kb on - strand, within GFF2635 at 49.014 kb on - strand at 49.103 kb on + strand at 49.103 kb on + strand at 49.103 kb on + strand at 49.103 kb on + strand at 49.103 kb on + strand at 49.103 kb on + strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.165 kb on + strand, within GFF2636 at 49.166 kb on - strand, within GFF2636 at 49.166 kb on - strand, within GFF2636 at 49.253 kb on + strand, within GFF2636 at 49.253 kb on + strand, within GFF2636 at 49.253 kb on + strand, within GFF2636 at 49.254 kb on - strand, within GFF2636 at 49.487 kb on + strand, within GFF2636 at 49.487 kb on + strand, within GFF2636 at 49.488 kb on - strand, within GFF2636 at 49.488 kb on - strand, within GFF2636 at 49.696 kb on + strand, within GFF2636 at 49.751 kb on + strand, within GFF2636 at 49.751 kb on + strand, within GFF2636 at 49.751 kb on + strand, within GFF2636 at 49.752 kb on - strand, within GFF2636 at 49.752 kb on - strand, within GFF2636 at 49.766 kb on + strand, within GFF2636 at 49.766 kb on + strand, within GFF2636 at 49.766 kb on + strand, within GFF2636 at 49.767 kb on - strand, within GFF2636 at 49.767 kb on - strand, within GFF2636 at 49.767 kb on - strand, within GFF2636 at 49.767 kb on - strand, within GFF2636 at 49.836 kb on - strand, within GFF2636 at 49.841 kb on + strand, within GFF2636 at 49.841 kb on + strand, within GFF2636 at 49.841 kb on + strand, within GFF2636 at 49.842 kb on - strand, within GFF2636 at 49.842 kb on - strand, within GFF2636 at 49.842 kb on - strand, within GFF2636 at 50.606 kb on + strand, within GFF2636 at 50.704 kb on + strand at 50.704 kb on + strand at 50.705 kb on - strand at 50.705 kb on - strand at 51.026 kb on - strand, within GFF2637 at 51.550 kb on - strand, within GFF2638 at 51.550 kb on - strand, within GFF2638 at 51.550 kb on - strand, within GFF2638 at 51.550 kb on - strand, within GFF2638
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 48,244 + GFF2635 0.76 -1.1 48,245 - GFF2635 0.76 -0.3 48,313 - GFF2635 0.78 -0.1 48,313 - GFF2635 0.78 +1.5 48,313 - GFF2635 0.78 -1.1 49,014 - -3.7 49,103 + -0.4 49,103 + -0.1 49,103 + +2.2 49,103 + -1.2 49,103 + +2.3 49,103 + -1.2 49,104 - +1.0 49,104 - +1.4 49,104 - -3.1 49,104 - -0.7 49,104 - -2.3 49,104 - +1.0 49,104 - -0.9 49,165 + GFF2636 0.12 -0.9 49,166 - GFF2636 0.12 -0.1 49,166 - GFF2636 0.12 +0.9 49,253 + GFF2636 0.17 -1.9 49,253 + GFF2636 0.17 +1.2 49,253 + GFF2636 0.17 -0.9 49,254 - GFF2636 0.17 -1.7 49,487 + GFF2636 0.29 -1.3 49,487 + GFF2636 0.29 +0.1 49,488 - GFF2636 0.29 -0.9 49,488 - GFF2636 0.29 +0.9 49,696 + GFF2636 0.41 +0.1 49,751 + GFF2636 0.44 -1.1 49,751 + GFF2636 0.44 +0.9 49,751 + GFF2636 0.44 -4.0 49,752 - GFF2636 0.44 -1.9 49,752 - GFF2636 0.44 -1.1 49,766 + GFF2636 0.44 +0.2 49,766 + GFF2636 0.44 -0.4 49,766 + GFF2636 0.44 +0.6 49,767 - GFF2636 0.44 -2.0 49,767 - GFF2636 0.44 -0.4 49,767 - GFF2636 0.44 -0.1 49,767 - GFF2636 0.44 +0.1 49,836 - GFF2636 0.48 -3.8 49,841 + GFF2636 0.48 +0.2 49,841 + GFF2636 0.48 +0.2 49,841 + GFF2636 0.48 -0.9 49,842 - GFF2636 0.48 -1.4 49,842 - GFF2636 0.48 +0.6 49,842 - GFF2636 0.48 +0.2 50,606 + GFF2636 0.89 -2.4 50,704 + -0.1 50,704 + -3.2 50,705 - -3.1 50,705 - -1.8 51,026 - GFF2637 0.50 +1.4 51,550 - GFF2638 0.27 +3.5 51,550 - GFF2638 0.27 -1.6 51,550 - GFF2638 0.27 -0.1 51,550 - GFF2638 0.27 +0.1
Or see this region's nucleotide sequence