Strain Fitness in Variovorax sp. SCN45 around GFF2630

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2629 and GFF2630 are separated by 101 nucleotidesGFF2630 and GFF2631 are separated by 59 nucleotidesGFF2631 and GFF2632 are separated by 32 nucleotides GFF2629 - hypothetical protein, at 41,814 to 42,896 GFF2629 GFF2630 - Ligand-binding SRPBCC domain protein family, at 42,998 to 43,288 GFF2630 GFF2631 - Transcriptional regulator, ArsR family, at 43,348 to 43,809 GFF2631 GFF2632 - no description, at 43,842 to 44,387 GFF2632 Position (kb) 42 43 44Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.081 kb on + strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.082 kb on - strand, within GFF2629at 42.108 kb on + strand, within GFF2629at 42.109 kb on - strand, within GFF2629at 42.109 kb on - strand, within GFF2629at 42.109 kb on - strand, within GFF2629at 42.109 kb on - strand, within GFF2629at 42.119 kb on + strand, within GFF2629at 42.119 kb on + strand, within GFF2629at 42.119 kb on + strand, within GFF2629at 42.119 kb on + strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.120 kb on - strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.123 kb on + strand, within GFF2629at 42.124 kb on - strand, within GFF2629at 42.327 kb on + strand, within GFF2629at 42.327 kb on + strand, within GFF2629at 42.327 kb on + strand, within GFF2629at 42.328 kb on - strand, within GFF2629at 42.328 kb on - strand, within GFF2629at 42.328 kb on - strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.354 kb on - strand, within GFF2629at 42.354 kb on - strand, within GFF2629at 42.354 kb on - strand, within GFF2629at 42.459 kb on + strand, within GFF2629at 42.459 kb on + strand, within GFF2629at 42.460 kb on - strand, within GFF2629at 42.460 kb on - strand, within GFF2629at 42.460 kb on - strand, within GFF2629at 42.466 kb on - strand, within GFF2629at 42.489 kb on + strand, within GFF2629at 42.521 kb on - strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.587 kb on + strand, within GFF2629at 42.655 kb on + strand, within GFF2629at 42.655 kb on + strand, within GFF2629at 42.735 kb on + strand, within GFF2629at 42.735 kb on + strand, within GFF2629at 42.735 kb on + strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.930 kb on + strandat 42.930 kb on + strandat 42.930 kb on + strandat 42.931 kb on - strandat 42.976 kb on + strandat 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.222 kb on - strand, within GFF2630at 43.222 kb on - strand, within GFF2630at 43.222 kb on - strand, within GFF2630at 43.456 kb on + strand, within GFF2631at 43.456 kb on + strand, within GFF2631at 43.457 kb on - strand, within GFF2631at 43.481 kb on + strand, within GFF2631at 43.820 kb on - strandat 43.909 kb on + strand, within GFF2632at 43.909 kb on + strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 44.101 kb on + strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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42,081 + GFF2629 0.25 -0.6
42,081 + GFF2629 0.25 -0.7
42,081 + GFF2629 0.25 +0.1
42,081 + GFF2629 0.25 +1.1
42,081 + GFF2629 0.25 +3.3
42,081 + GFF2629 0.25 -1.8
42,081 + GFF2629 0.25 +0.0
42,081 + GFF2629 0.25 -1.6
42,081 + GFF2629 0.25 +0.5
42,082 - GFF2629 0.25 +0.3
42,082 - GFF2629 0.25 -2.8
42,082 - GFF2629 0.25 -0.1
42,082 - GFF2629 0.25 +0.7
42,082 - GFF2629 0.25 -0.2
42,082 - GFF2629 0.25 -1.6
42,082 - GFF2629 0.25 +0.8
42,108 + GFF2629 0.27 -1.9
42,109 - GFF2629 0.27 -0.2
42,109 - GFF2629 0.27 -2.0
42,109 - GFF2629 0.27 -0.1
42,109 - GFF2629 0.27 -1.8
42,119 + GFF2629 0.28 -0.3
42,119 + GFF2629 0.28 -0.4
42,119 + GFF2629 0.28 -0.7
42,119 + GFF2629 0.28 +0.9
42,120 - GFF2629 0.28 -2.4
42,120 - GFF2629 0.28 +2.1
42,120 - GFF2629 0.28 +0.5
42,120 - GFF2629 0.28 +0.5
42,120 - GFF2629 0.28 -1.1
42,120 - GFF2629 0.28 +0.5
42,123 + GFF2629 0.29 -1.9
42,123 + GFF2629 0.29 -0.4
42,123 + GFF2629 0.29 -1.7
42,123 + GFF2629 0.29 -2.7
42,123 + GFF2629 0.29 -1.8
42,123 + GFF2629 0.29 -1.6
42,124 - GFF2629 0.29 +1.6
42,327 + GFF2629 0.47 -0.1
42,327 + GFF2629 0.47 +0.1
42,327 + GFF2629 0.47 +2.2
42,328 - GFF2629 0.47 +1.3
42,328 - GFF2629 0.47 +2.0
42,328 - GFF2629 0.47 +0.5
42,353 + GFF2629 0.50 -2.1
42,353 + GFF2629 0.50 +0.8
42,353 + GFF2629 0.50 +1.0
42,353 + GFF2629 0.50 -0.7
42,353 + GFF2629 0.50 +0.3
42,353 + GFF2629 0.50 -1.3
42,354 - GFF2629 0.50 -0.9
42,354 - GFF2629 0.50 +0.5
42,354 - GFF2629 0.50 -0.5
42,459 + GFF2629 0.60 -2.4
42,459 + GFF2629 0.60 -0.4
42,460 - GFF2629 0.60 +0.1
42,460 - GFF2629 0.60 +1.6
42,460 - GFF2629 0.60 -1.3
42,466 - GFF2629 0.60 -0.0
42,489 + GFF2629 0.62 -1.6
42,521 - GFF2629 0.65 -3.0
42,550 + GFF2629 0.68 +0.4
42,550 + GFF2629 0.68 -0.9
42,550 + GFF2629 0.68 +1.0
42,550 + GFF2629 0.68 -1.3
42,550 + GFF2629 0.68 -4.2
42,550 + GFF2629 0.68 +0.1
42,550 + GFF2629 0.68 -0.4
42,551 - GFF2629 0.68 -0.1
42,551 - GFF2629 0.68 +0.9
42,551 - GFF2629 0.68 +2.0
42,551 - GFF2629 0.68 -3.9
42,551 - GFF2629 0.68 -0.1
42,587 + GFF2629 0.71 -3.5
42,655 + GFF2629 0.78 -0.9
42,655 + GFF2629 0.78 -1.1
42,735 + GFF2629 0.85 +0.9
42,735 + GFF2629 0.85 -3.9
42,735 + GFF2629 0.85 -3.5
42,736 - GFF2629 0.85 -2.2
42,736 - GFF2629 0.85 +0.8
42,736 - GFF2629 0.85 -0.2
42,736 - GFF2629 0.85 -0.2
42,736 - GFF2629 0.85 +2.2
42,736 - GFF2629 0.85 -0.6
42,736 - GFF2629 0.85 +1.3
42,736 - GFF2629 0.85 -0.7
42,930 + -2.2
42,930 + -1.9
42,930 + +0.4
42,931 - -2.0
42,976 + -0.4
43,221 + GFF2630 0.77 -1.9
43,221 + GFF2630 0.77 -2.5
43,221 + GFF2630 0.77 -2.2
43,221 + GFF2630 0.77 +2.5
43,221 + GFF2630 0.77 -0.7
43,222 - GFF2630 0.77 +0.3
43,222 - GFF2630 0.77 +0.5
43,222 - GFF2630 0.77 -0.9
43,456 + GFF2631 0.23 +3.5
43,456 + GFF2631 0.23 +0.3
43,457 - GFF2631 0.24 -0.4
43,481 + GFF2631 0.29 +0.3
43,820 - +0.8
43,909 + GFF2632 0.12 +0.6
43,909 + GFF2632 0.12 -0.6
43,910 - GFF2632 0.12 -1.2
43,910 - GFF2632 0.12 -1.7
43,910 - GFF2632 0.12 +1.4
43,910 - GFF2632 0.12 -0.9
43,910 - GFF2632 0.12 -1.4
44,101 + GFF2632 0.47 -1.1
44,102 - GFF2632 0.48 +0.9
44,102 - GFF2632 0.48 -0.7
44,102 - GFF2632 0.48 -1.3
44,102 - GFF2632 0.48 -0.1
44,102 - GFF2632 0.48 +0.6
44,102 - GFF2632 0.48 -0.4
44,102 - GFF2632 0.48 -2.1
44,102 - GFF2632 0.48 +1.7

Or see this region's nucleotide sequence