Strain Fitness in Variovorax sp. SCN45 around GFF2584

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2581 and GFF2582 are separated by 78 nucleotidesGFF2582 and GFF2583 are separated by 69 nucleotidesGFF2583 and GFF2584 are separated by 16 nucleotidesGFF2584 and GFF2585 overlap by 16 nucleotidesGFF2585 and GFF2586 are separated by 48 nucleotides GFF2581 - Segregation and condensation protein A, at 638,123 to 638,959 GFF2581 GFF2582 - Uncharacterized DUF3460-containg protein Bmul_0854, at 639,038 to 639,244 GFF2582 GFF2583 - putative lipoprotein, at 639,314 to 639,790 GFF2583 GFF2584 - Sulfate permease, at 639,807 to 641,486 GFF2584 GFF2585 - no description, at 641,471 to 641,584 GFF2585 GFF2586 - Hydrogenase assembly protein HoxX, at 641,633 to 643,354 GFF2586 Position (kb) 639 640 641 642Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 638.982 kb on + strandat 639.040 kb on - strandat 639.040 kb on - strandat 639.040 kb on - strandat 639.040 kb on - strandat 639.040 kb on - strandat 639.058 kb on - strandat 639.058 kb on - strandat 639.063 kb on + strand, within GFF2582at 639.063 kb on + strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.093 kb on + strand, within GFF2582at 639.093 kb on + strand, within GFF2582at 639.094 kb on - strand, within GFF2582at 639.094 kb on - strand, within GFF2582at 639.094 kb on - strand, within GFF2582at 639.219 kb on + strand, within GFF2582at 639.219 kb on + strand, within GFF2582at 639.219 kb on + strand, within GFF2582at 639.219 kb on + strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.244 kb on + strandat 639.244 kb on + strandat 639.244 kb on + strandat 639.244 kb on + strandat 639.244 kb on + strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.257 kb on + strandat 639.258 kb on - strandat 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.477 kb on - strand, within GFF2583at 639.477 kb on - strand, within GFF2583at 639.477 kb on - strand, within GFF2583at 639.477 kb on - strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.648 kb on - strand, within GFF2583at 639.648 kb on - strand, within GFF2583at 639.648 kb on - strand, within GFF2583at 639.775 kb on + strandat 639.979 kb on + strand, within GFF2584at 639.979 kb on + strand, within GFF2584at 639.979 kb on + strand, within GFF2584at 639.979 kb on + strand, within GFF2584at 639.979 kb on + strand, within GFF2584at 639.980 kb on - strand, within GFF2584at 639.980 kb on - strand, within GFF2584at 639.980 kb on - strand, within GFF2584at 640.087 kb on + strand, within GFF2584at 640.087 kb on + strand, within GFF2584at 640.087 kb on + strand, within GFF2584at 640.088 kb on - strand, within GFF2584at 640.088 kb on - strand, within GFF2584at 640.088 kb on - strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.097 kb on - strand, within GFF2584at 640.097 kb on - strand, within GFF2584at 640.097 kb on - strand, within GFF2584at 640.183 kb on - strand, within GFF2584at 640.184 kb on + strand, within GFF2584at 641.425 kb on + strandat 641.425 kb on + strandat 641.426 kb on - strandat 641.426 kb on - strandat 641.426 kb on - strandat 641.426 kb on - strandat 641.543 kb on + strand, within GFF2585at 641.543 kb on + strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.558 kb on + strand, within GFF2585at 641.580 kb on + strandat 641.581 kb on - strandat 641.581 kb on - strandat 641.605 kb on + strandat 641.605 kb on + strandat 641.606 kb on - strandat 641.606 kb on - strandat 641.618 kb on + strandat 641.618 kb on + strandat 641.618 kb on + strandat 641.619 kb on - strandat 641.619 kb on - strandat 642.026 kb on + strand, within GFF2586at 642.098 kb on + strand, within GFF2586at 642.098 kb on + strand, within GFF2586at 642.098 kb on + strand, within GFF2586at 642.098 kb on + strand, within GFF2586at 642.098 kb on + strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.272 kb on + strand, within GFF2586at 642.272 kb on + strand, within GFF2586at 642.272 kb on + strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.429 kb on - strand, within GFF2586

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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638,982 + -2.7
639,040 - -1.3
639,040 - -0.2
639,040 - -0.1
639,040 - -0.9
639,040 - -2.9
639,058 - +3.7
639,058 - -1.5
639,063 + GFF2582 0.12 -0.5
639,063 + GFF2582 0.12 +2.1
639,064 - GFF2582 0.13 -0.2
639,064 - GFF2582 0.13 -0.4
639,064 - GFF2582 0.13 -0.3
639,064 - GFF2582 0.13 -0.9
639,064 - GFF2582 0.13 -0.3
639,064 - GFF2582 0.13 +0.5
639,064 - GFF2582 0.13 +2.6
639,064 - GFF2582 0.13 -2.3
639,093 + GFF2582 0.27 -1.4
639,093 + GFF2582 0.27 +2.3
639,094 - GFF2582 0.27 -2.4
639,094 - GFF2582 0.27 -1.6
639,094 - GFF2582 0.27 +0.1
639,219 + GFF2582 0.87 +0.1
639,219 + GFF2582 0.87 -0.5
639,219 + GFF2582 0.87 +1.1
639,219 + GFF2582 0.87 +0.5
639,220 - GFF2582 0.88 -3.0
639,220 - GFF2582 0.88 -0.3
639,220 - GFF2582 0.88 -1.9
639,220 - GFF2582 0.88 -3.2
639,220 - GFF2582 0.88 -1.7
639,220 - GFF2582 0.88 -1.7
639,220 - GFF2582 0.88 -1.5
639,220 - GFF2582 0.88 +1.3
639,244 + -0.3
639,244 + -1.1
639,244 + -0.5
639,244 + +1.1
639,244 + -0.3
639,245 - -2.3
639,245 - +0.5
639,245 - -0.7
639,245 - -0.3
639,245 - -0.6
639,245 - +1.0
639,245 - -1.8
639,245 - +0.1
639,245 - -1.6
639,245 - +0.5
639,245 - -1.2
639,245 - -1.5
639,245 - +0.3
639,245 - -2.7
639,257 + -0.5
639,258 - -2.3
639,476 + GFF2583 0.34 -1.1
639,476 + GFF2583 0.34 +1.1
639,476 + GFF2583 0.34 +1.5
639,476 + GFF2583 0.34 +0.4
639,476 + GFF2583 0.34 +1.5
639,476 + GFF2583 0.34 +0.9
639,476 + GFF2583 0.34 -0.7
639,476 + GFF2583 0.34 +0.4
639,476 + GFF2583 0.34 -0.7
639,477 - GFF2583 0.34 -2.8
639,477 - GFF2583 0.34 -0.9
639,477 - GFF2583 0.34 +0.5
639,477 - GFF2583 0.34 +0.4
639,506 + GFF2583 0.40 -0.5
639,506 + GFF2583 0.40 -3.8
639,506 + GFF2583 0.40 +0.1
639,506 + GFF2583 0.40 -2.7
639,506 + GFF2583 0.40 -0.2
639,506 + GFF2583 0.40 -0.5
639,506 + GFF2583 0.40 -0.4
639,506 + GFF2583 0.40 +2.2
639,506 + GFF2583 0.40 +0.7
639,506 + GFF2583 0.40 -1.4
639,506 + GFF2583 0.40 -0.3
639,506 + GFF2583 0.40 +1.7
639,506 + GFF2583 0.40 +0.8
639,506 + GFF2583 0.40 -3.0
639,506 + GFF2583 0.40 +0.7
639,506 + GFF2583 0.40 -1.0
639,506 + GFF2583 0.40 +0.1
639,506 + GFF2583 0.40 +2.1
639,506 + GFF2583 0.40 -2.9
639,506 + GFF2583 0.40 -0.2
639,507 - GFF2583 0.40 -2.7
639,507 - GFF2583 0.40 +0.1
639,507 - GFF2583 0.40 -0.9
639,507 - GFF2583 0.40 -0.5
639,507 - GFF2583 0.40 -0.3
639,507 - GFF2583 0.40 +2.1
639,507 - GFF2583 0.40 +2.2
639,507 - GFF2583 0.40 +0.8
639,507 - GFF2583 0.40 +1.2
639,507 - GFF2583 0.40 -0.5
639,507 - GFF2583 0.40 +1.1
639,507 - GFF2583 0.40 -0.9
639,507 - GFF2583 0.40 -0.9
639,507 - GFF2583 0.40 -1.0
639,507 - GFF2583 0.40 -0.5
639,507 - GFF2583 0.40 -1.1
639,507 - GFF2583 0.40 -2.1
639,507 - GFF2583 0.40 +1.0
639,507 - GFF2583 0.40 -0.6
639,507 - GFF2583 0.40 +1.7
639,648 - GFF2583 0.70 +1.1
639,648 - GFF2583 0.70 +1.9
639,648 - GFF2583 0.70 +0.1
639,775 + -0.0
639,979 + GFF2584 0.10 -1.1
639,979 + GFF2584 0.10 -1.1
639,979 + GFF2584 0.10 -0.5
639,979 + GFF2584 0.10 -2.3
639,979 + GFF2584 0.10 -0.3
639,980 - GFF2584 0.10 -1.4
639,980 - GFF2584 0.10 -1.7
639,980 - GFF2584 0.10 -1.1
640,087 + GFF2584 0.17 +1.1
640,087 + GFF2584 0.17 -3.3
640,087 + GFF2584 0.17 +0.7
640,088 - GFF2584 0.17 -3.3
640,088 - GFF2584 0.17 -0.3
640,088 - GFF2584 0.17 -0.9
640,096 + GFF2584 0.17 -1.2
640,096 + GFF2584 0.17 -0.6
640,096 + GFF2584 0.17 -1.6
640,096 + GFF2584 0.17 +0.4
640,096 + GFF2584 0.17 +0.1
640,096 + GFF2584 0.17 +0.7
640,096 + GFF2584 0.17 +0.5
640,096 + GFF2584 0.17 -2.0
640,096 + GFF2584 0.17 -3.5
640,097 - GFF2584 0.17 -0.7
640,097 - GFF2584 0.17 -0.3
640,097 - GFF2584 0.17 -1.5
640,183 - GFF2584 0.22 +0.3
640,184 + GFF2584 0.22 +0.7
641,425 + +0.3
641,425 + +0.1
641,426 - -1.6
641,426 - -0.3
641,426 - +1.0
641,426 - +0.2
641,543 + GFF2585 0.63 -0.4
641,543 + GFF2585 0.63 -1.4
641,544 - GFF2585 0.64 -2.0
641,544 - GFF2585 0.64 +1.7
641,544 - GFF2585 0.64 -1.7
641,544 - GFF2585 0.64 +0.7
641,544 - GFF2585 0.64 +0.1
641,544 - GFF2585 0.64 -0.5
641,558 + GFF2585 0.76 +0.4
641,580 + -1.1
641,581 - -1.7
641,581 - -0.9
641,605 + +0.3
641,605 + +4.1
641,606 - +0.5
641,606 - -0.4
641,618 + +0.1
641,618 + -0.5
641,618 + -0.1
641,619 - +0.5
641,619 - -1.7
642,026 + GFF2586 0.23 +2.0
642,098 + GFF2586 0.27 +1.0
642,098 + GFF2586 0.27 -0.3
642,098 + GFF2586 0.27 -2.4
642,098 + GFF2586 0.27 -0.4
642,098 + GFF2586 0.27 -2.3
642,099 - GFF2586 0.27 +0.7
642,099 - GFF2586 0.27 +1.3
642,099 - GFF2586 0.27 +0.5
642,099 - GFF2586 0.27 +0.6
642,099 - GFF2586 0.27 +1.1
642,099 - GFF2586 0.27 -1.2
642,099 - GFF2586 0.27 +0.5
642,272 + GFF2586 0.37 -0.6
642,272 + GFF2586 0.37 -2.0
642,272 + GFF2586 0.37 -0.0
642,273 - GFF2586 0.37 +1.6
642,273 - GFF2586 0.37 -1.1
642,273 - GFF2586 0.37 +0.1
642,273 - GFF2586 0.37 +1.6
642,273 - GFF2586 0.37 -0.3
642,273 - GFF2586 0.37 -0.9
642,273 - GFF2586 0.37 -2.3
642,273 - GFF2586 0.37 +1.1
642,273 - GFF2586 0.37 -0.3
642,428 + GFF2586 0.46 -1.3
642,428 + GFF2586 0.46 -0.5
642,428 + GFF2586 0.46 +0.1
642,428 + GFF2586 0.46 -0.5
642,428 + GFF2586 0.46 +0.5
642,428 + GFF2586 0.46 +0.0
642,429 - GFF2586 0.46 +1.1
642,429 - GFF2586 0.46 -1.6
642,429 - GFF2586 0.46 -1.9
642,429 - GFF2586 0.46 +1.0

Or see this region's nucleotide sequence