Strain Fitness in Variovorax sp. SCN45 around GFF2534

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2532 and GFF2533 are separated by 52 nucleotidesGFF2533 and GFF2534 are separated by 127 nucleotidesGFF2534 and GFF2535 are separated by 15 nucleotidesGFF2535 and GFF2536 are separated by 48 nucleotides GFF2532 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 591,249 to 593,714 GFF2532 GFF2533 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 593,767 to 594,510 GFF2533 GFF2534 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 594,638 to 595,645 GFF2534 GFF2535 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 595,661 to 596,509 GFF2535 GFF2536 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 596,558 to 597,439 GFF2536 Position (kb) 594 595 596Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.743 kb on - strandat 593.743 kb on - strandat 593.743 kb on - strandat 593.743 kb on - strandat 593.752 kb on + strandat 593.753 kb on - strandat 593.864 kb on + strand, within GFF2533at 593.864 kb on + strand, within GFF2533at 593.864 kb on + strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 594.240 kb on - strand, within GFF2533at 594.489 kb on - strandat 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 595.341 kb on + strand, within GFF2534at 595.341 kb on + strand, within GFF2534at 595.342 kb on - strand, within GFF2534at 595.342 kb on - strand, within GFF2534at 595.342 kb on - strand, within GFF2534at 595.374 kb on + strand, within GFF2534at 595.374 kb on + strand, within GFF2534at 595.375 kb on - strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.628 kb on + strandat 595.628 kb on + strandat 595.628 kb on + strandat 595.629 kb on - strandat 595.629 kb on - strandat 595.629 kb on - strandat 595.629 kb on - strandat 595.662 kb on + strandat 595.662 kb on + strandat 595.663 kb on - strandat 595.663 kb on - strandat 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.878 kb on + strand, within GFF2535at 595.878 kb on + strand, within GFF2535at 595.878 kb on + strand, within GFF2535at 595.879 kb on - strand, within GFF2535at 595.879 kb on - strand, within GFF2535at 595.879 kb on - strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.110 kb on - strand, within GFF2535at 596.110 kb on - strand, within GFF2535at 596.110 kb on - strand, within GFF2535at 596.110 kb on - strand, within GFF2535at 596.195 kb on + strand, within GFF2535at 596.196 kb on + strand, within GFF2535at 596.196 kb on + strand, within GFF2535at 596.196 kb on + strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.337 kb on + strand, within GFF2535at 596.337 kb on + strand, within GFF2535at 596.337 kb on + strand, within GFF2535at 596.337 kb on + strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.428 kb on - strandat 596.428 kb on - strandat 596.428 kb on - strandat 596.428 kb on - strandat 596.428 kb on - strandat 596.562 kb on + strandat 596.563 kb on - strandat 596.563 kb on - strandat 596.583 kb on + strandat 596.583 kb on + strandat 596.583 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
593,725 + -1.6
593,725 + -0.3
593,725 + -1.8
593,725 + -0.3
593,725 + -0.3
593,725 + -0.9
593,726 - -1.1
593,726 - -0.5
593,726 - -0.3
593,726 - +2.1
593,726 - -0.3
593,726 - +2.0
593,726 - -0.7
593,726 - -0.9
593,726 - -2.1
593,726 - +0.1
593,726 - -1.3
593,726 - -0.3
593,726 - +0.1
593,726 - -1.4
593,726 - +0.5
593,742 + -0.9
593,742 + -1.3
593,742 + +0.1
593,742 + -0.5
593,742 + -2.3
593,742 + +0.8
593,743 - +0.3
593,743 - +0.2
593,743 - -0.4
593,743 - +0.5
593,752 + -0.1
593,753 - -1.0
593,864 + GFF2533 0.13 -1.6
593,864 + GFF2533 0.13 -2.5
593,864 + GFF2533 0.13 +2.4
593,865 - GFF2533 0.13 +1.2
593,865 - GFF2533 0.13 -0.1
593,865 - GFF2533 0.13 +0.1
593,865 - GFF2533 0.13 -0.9
594,240 - GFF2533 0.64 -3.5
594,489 - -0.2
594,780 + GFF2534 0.14 -1.5
594,780 + GFF2534 0.14 +0.9
594,780 + GFF2534 0.14 +0.4
594,780 + GFF2534 0.14 +3.3
594,780 + GFF2534 0.14 +0.1
594,781 - GFF2534 0.14 +2.1
594,781 - GFF2534 0.14 +3.7
594,781 - GFF2534 0.14 +3.2
594,781 - GFF2534 0.14 -1.5
594,969 + GFF2534 0.33 -0.9
594,969 + GFF2534 0.33 -1.6
594,969 + GFF2534 0.33 +0.8
594,969 + GFF2534 0.33 +2.2
594,969 + GFF2534 0.33 -1.0
594,969 + GFF2534 0.33 -0.2
594,969 + GFF2534 0.33 -2.5
594,969 + GFF2534 0.33 +1.1
594,969 + GFF2534 0.33 -3.0
594,970 - GFF2534 0.33 -2.3
594,970 - GFF2534 0.33 +0.4
594,970 - GFF2534 0.33 -0.6
594,970 - GFF2534 0.33 -0.2
594,970 - GFF2534 0.33 +0.4
594,970 - GFF2534 0.33 -0.5
594,970 - GFF2534 0.33 +0.7
594,970 - GFF2534 0.33 +1.0
594,970 - GFF2534 0.33 -2.5
594,970 - GFF2534 0.33 -1.4
594,970 - GFF2534 0.33 -2.8
594,970 - GFF2534 0.33 +0.6
594,970 - GFF2534 0.33 +1.5
595,341 + GFF2534 0.70 +2.7
595,341 + GFF2534 0.70 -0.3
595,342 - GFF2534 0.70 -0.6
595,342 - GFF2534 0.70 -0.5
595,342 - GFF2534 0.70 +0.6
595,374 + GFF2534 0.73 -2.7
595,374 + GFF2534 0.73 +0.1
595,375 - GFF2534 0.73 -1.3
595,383 + GFF2534 0.74 -0.8
595,383 + GFF2534 0.74 -1.4
595,383 + GFF2534 0.74 -1.9
595,383 + GFF2534 0.74 -1.4
595,383 + GFF2534 0.74 +2.5
595,384 - GFF2534 0.74 -0.7
595,384 - GFF2534 0.74 -0.2
595,384 - GFF2534 0.74 +1.1
595,384 - GFF2534 0.74 +0.8
595,384 - GFF2534 0.74 +0.1
595,384 - GFF2534 0.74 +1.4
595,628 + +1.1
595,628 + +0.1
595,628 + -0.0
595,629 - -0.2
595,629 - +0.7
595,629 - +1.8
595,629 - -0.3
595,662 + +0.6
595,662 + -1.7
595,663 - +1.2
595,663 - +1.0
595,824 + GFF2535 0.19 +0.6
595,824 + GFF2535 0.19 +0.1
595,824 + GFF2535 0.19 +1.5
595,824 + GFF2535 0.19 +1.1
595,824 + GFF2535 0.19 +0.2
595,824 + GFF2535 0.19 -2.9
595,824 + GFF2535 0.19 -0.7
595,824 + GFF2535 0.19 -3.3
595,824 + GFF2535 0.19 -0.7
595,824 + GFF2535 0.19 -2.8
595,824 + GFF2535 0.19 -2.1
595,824 + GFF2535 0.19 +0.2
595,824 + GFF2535 0.19 +0.2
595,825 - GFF2535 0.19 -1.7
595,825 - GFF2535 0.19 +0.5
595,825 - GFF2535 0.19 -0.2
595,825 - GFF2535 0.19 -2.6
595,825 - GFF2535 0.19 -1.3
595,825 - GFF2535 0.19 -1.9
595,825 - GFF2535 0.19 -1.3
595,825 - GFF2535 0.19 -2.5
595,863 + GFF2535 0.24 +0.9
595,863 + GFF2535 0.24 -0.1
595,863 + GFF2535 0.24 -0.5
595,863 + GFF2535 0.24 -0.3
595,863 + GFF2535 0.24 -1.7
595,863 + GFF2535 0.24 -0.7
595,863 + GFF2535 0.24 +0.6
595,863 + GFF2535 0.24 +0.1
595,863 + GFF2535 0.24 -4.1
595,864 - GFF2535 0.24 -1.9
595,864 - GFF2535 0.24 -1.4
595,864 - GFF2535 0.24 -1.1
595,864 - GFF2535 0.24 -1.3
595,864 - GFF2535 0.24 -1.6
595,864 - GFF2535 0.24 -0.3
595,878 + GFF2535 0.26 -0.9
595,878 + GFF2535 0.26 -1.5
595,878 + GFF2535 0.26 -1.3
595,879 - GFF2535 0.26 +0.5
595,879 - GFF2535 0.26 +1.1
595,879 - GFF2535 0.26 +2.0
596,109 + GFF2535 0.53 -1.3
596,109 + GFF2535 0.53 +0.0
596,109 + GFF2535 0.53 -1.1
596,109 + GFF2535 0.53 +2.5
596,109 + GFF2535 0.53 +0.2
596,109 + GFF2535 0.53 +2.1
596,110 - GFF2535 0.53 -0.7
596,110 - GFF2535 0.53 +1.2
596,110 - GFF2535 0.53 -1.3
596,110 - GFF2535 0.53 +1.3
596,195 + GFF2535 0.63 -0.6
596,196 + GFF2535 0.63 -0.5
596,196 + GFF2535 0.63 +0.1
596,196 + GFF2535 0.63 -1.5
596,197 - GFF2535 0.63 -0.7
596,197 - GFF2535 0.63 -2.7
596,197 - GFF2535 0.63 -0.7
596,197 - GFF2535 0.63 +0.8
596,197 - GFF2535 0.63 -2.2
596,197 - GFF2535 0.63 +2.1
596,337 + GFF2535 0.80 +1.7
596,337 + GFF2535 0.80 +0.9
596,337 + GFF2535 0.80 -1.2
596,337 + GFF2535 0.80 -0.2
596,338 - GFF2535 0.80 +1.1
596,338 - GFF2535 0.80 -0.5
596,338 - GFF2535 0.80 -0.3
596,338 - GFF2535 0.80 -1.3
596,338 - GFF2535 0.80 -0.8
596,338 - GFF2535 0.80 +0.1
596,427 + +1.1
596,427 + -2.4
596,427 + -0.3
596,427 + -2.5
596,427 + -0.9
596,427 + +0.1
596,427 + -2.2
596,427 + -1.3
596,427 + +0.7
596,428 - -0.5
596,428 - -1.4
596,428 - -3.0
596,428 - +0.8
596,428 - +2.7
596,562 + -0.4
596,563 - -3.2
596,563 - -1.7
596,583 + -0.1
596,583 + -1.9
596,583 + -1.8

Or see this region's nucleotide sequence