Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2464 and GFF2465 are separated by 33 nucleotides GFF2465 and GFF2466 overlap by 4 nucleotides GFF2466 and GFF2467 are separated by 2 nucleotides GFF2467 and GFF2468 are separated by 16 nucleotides
GFF2464 - Sensory histidine kinase BaeS, at 523,970 to 525,730
GFF2464
GFF2465 - no description, at 525,764 to 525,925
GFF2465
GFF2466 - no description, at 525,922 to 526,788
GFF2466
GFF2467 - Response regulator BaeR, at 526,791 to 527,507
GFF2467
GFF2468 - Outer membrane protein assembly factor YaeT, at 527,524 to 529,926
GFF2468
Position (kb) 525
526
527 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 525.072 kb on + strand, within GFF2464 at 525.073 kb on - strand, within GFF2464 at 525.073 kb on - strand, within GFF2464 at 525.073 kb on - strand, within GFF2464 at 525.073 kb on - strand, within GFF2464 at 525.255 kb on + strand, within GFF2464 at 525.262 kb on - strand, within GFF2464 at 525.393 kb on + strand, within GFF2464 at 525.393 kb on + strand, within GFF2464 at 525.453 kb on + strand, within GFF2464 at 525.453 kb on + strand, within GFF2464 at 526.069 kb on + strand, within GFF2466 at 526.069 kb on + strand, within GFF2466 at 526.069 kb on + strand, within GFF2466 at 526.070 kb on - strand, within GFF2466 at 526.070 kb on - strand, within GFF2466 at 526.070 kb on - strand, within GFF2466 at 526.217 kb on - strand, within GFF2466 at 526.445 kb on - strand, within GFF2466 at 526.564 kb on + strand, within GFF2466 at 527.192 kb on - strand, within GFF2467 at 527.192 kb on - strand, within GFF2467 at 527.603 kb on + strand at 527.621 kb on + strand at 527.765 kb on + strand, within GFF2468 at 527.765 kb on + strand, within GFF2468 at 527.765 kb on + strand, within GFF2468 at 527.766 kb on - strand, within GFF2468
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 525,072 + GFF2464 0.63 -1.3 525,073 - GFF2464 0.63 -1.1 525,073 - GFF2464 0.63 -2.3 525,073 - GFF2464 0.63 -1.5 525,073 - GFF2464 0.63 -1.9 525,255 + GFF2464 0.73 +1.4 525,262 - GFF2464 0.73 +1.3 525,393 + GFF2464 0.81 -0.3 525,393 + GFF2464 0.81 -2.4 525,453 + GFF2464 0.84 +0.7 525,453 + GFF2464 0.84 +0.5 526,069 + GFF2466 0.17 +1.2 526,069 + GFF2466 0.17 +2.7 526,069 + GFF2466 0.17 +0.3 526,070 - GFF2466 0.17 +0.5 526,070 - GFF2466 0.17 -1.4 526,070 - GFF2466 0.17 -3.9 526,217 - GFF2466 0.34 -0.0 526,445 - GFF2466 0.60 -0.9 526,564 + GFF2466 0.74 -0.3 527,192 - GFF2467 0.56 +2.4 527,192 - GFF2467 0.56 +1.7 527,603 + -0.5 527,621 + -1.7 527,765 + GFF2468 0.10 -0.5 527,765 + GFF2468 0.10 -2.0 527,765 + GFF2468 0.10 +1.7 527,766 - GFF2468 0.10 +1.3
Or see this region's nucleotide sequence