Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2458 and GFF2459 overlap by 8 nucleotides GFF2459 and GFF2460 overlap by 4 nucleotides
GFF2458 - CzcABC family efflux RND transporter, membrane fusion protein, at 514,478 to 515,608
GFF2458
GFF2459 - CzcABC family efflux RND transporter, transmembrane protein, at 515,601 to 518,732
GFF2459
GFF2460 - Heavy metal RND efflux outer membrane protein, CzcC family, at 518,729 to 520,042
GFF2460
Position (kb) 515
516
517
518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 514.955 kb on + strand, within GFF2458 at 514.955 kb on + strand, within GFF2458 at 514.956 kb on - strand, within GFF2458 at 515.063 kb on + strand, within GFF2458 at 515.064 kb on - strand, within GFF2458 at 515.064 kb on - strand, within GFF2458 at 515.124 kb on - strand, within GFF2458 at 515.288 kb on + strand, within GFF2458 at 515.289 kb on - strand, within GFF2458 at 515.289 kb on - strand, within GFF2458 at 515.457 kb on - strand, within GFF2458 at 515.457 kb on - strand, within GFF2458 at 515.676 kb on + strand at 515.988 kb on + strand, within GFF2459 at 515.988 kb on + strand, within GFF2459 at 515.989 kb on - strand, within GFF2459 at 516.012 kb on + strand, within GFF2459 at 516.012 kb on + strand, within GFF2459 at 516.019 kb on - strand, within GFF2459 at 516.183 kb on + strand, within GFF2459 at 516.273 kb on + strand, within GFF2459 at 516.273 kb on + strand, within GFF2459 at 516.274 kb on - strand, within GFF2459 at 516.274 kb on - strand, within GFF2459 at 516.972 kb on + strand, within GFF2459 at 516.972 kb on + strand, within GFF2459 at 516.972 kb on + strand, within GFF2459 at 516.973 kb on - strand, within GFF2459 at 517.245 kb on + strand, within GFF2459 at 517.365 kb on + strand, within GFF2459 at 517.365 kb on + strand, within GFF2459 at 517.365 kb on + strand, within GFF2459 at 517.365 kb on + strand, within GFF2459 at 517.366 kb on - strand, within GFF2459 at 517.453 kb on - strand, within GFF2459 at 517.513 kb on - strand, within GFF2459 at 517.836 kb on + strand, within GFF2459 at 517.836 kb on + strand, within GFF2459 at 517.836 kb on + strand, within GFF2459 at 517.837 kb on - strand, within GFF2459 at 518.634 kb on + strand at 518.834 kb on + strand at 518.835 kb on - strand at 519.579 kb on - strand, within GFF2460
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 514,955 + GFF2458 0.42 +2.1 514,955 + GFF2458 0.42 -2.5 514,956 - GFF2458 0.42 -0.2 515,063 + GFF2458 0.52 +0.7 515,064 - GFF2458 0.52 +2.1 515,064 - GFF2458 0.52 -2.2 515,124 - GFF2458 0.57 -1.3 515,288 + GFF2458 0.72 -1.2 515,289 - GFF2458 0.72 +0.3 515,289 - GFF2458 0.72 -1.6 515,457 - GFF2458 0.87 -0.7 515,457 - GFF2458 0.87 -2.0 515,676 + -1.1 515,988 + GFF2459 0.12 -1.1 515,988 + GFF2459 0.12 -0.3 515,989 - GFF2459 0.12 -0.9 516,012 + GFF2459 0.13 +0.7 516,012 + GFF2459 0.13 -3.0 516,019 - GFF2459 0.13 -1.1 516,183 + GFF2459 0.19 +0.0 516,273 + GFF2459 0.21 -1.5 516,273 + GFF2459 0.21 -1.7 516,274 - GFF2459 0.21 -1.8 516,274 - GFF2459 0.21 +0.1 516,972 + GFF2459 0.44 -2.5 516,972 + GFF2459 0.44 -1.8 516,972 + GFF2459 0.44 -1.5 516,973 - GFF2459 0.44 +0.5 517,245 + GFF2459 0.52 -2.8 517,365 + GFF2459 0.56 -0.5 517,365 + GFF2459 0.56 -0.8 517,365 + GFF2459 0.56 -1.1 517,365 + GFF2459 0.56 -0.5 517,366 - GFF2459 0.56 -0.1 517,453 - GFF2459 0.59 +1.1 517,513 - GFF2459 0.61 -1.4 517,836 + GFF2459 0.71 -0.5 517,836 + GFF2459 0.71 +0.5 517,836 + GFF2459 0.71 -2.8 517,837 - GFF2459 0.71 -0.1 518,634 + -3.0 518,834 + -2.0 518,835 - +0.1 519,579 - GFF2460 0.65 +0.5
Or see this region's nucleotide sequence