Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2455 and GFF2457 are separated by 325 nucleotides GFF2457 and GFF2456 overlap by 2 nucleotides GFF2456 and GFF2458 are separated by 68 nucleotides
GFF2455 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 512,773 to 513,465
GFF2455
GFF2457 - no description, at 513,791 to 514,078
GFF2457
GFF2456 - no description, at 514,077 to 514,409
GFF2456
GFF2458 - CzcABC family efflux RND transporter, membrane fusion protein, at 514,478 to 515,608
GFF2458
Position (kb) 513
514
515 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 512.938 kb on + strand, within GFF2455 at 512.938 kb on + strand, within GFF2455 at 512.938 kb on + strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.941 kb on + strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 513.061 kb on + strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.089 kb on - strand, within GFF2455 at 513.089 kb on - strand, within GFF2455 at 513.578 kb on - strand at 513.941 kb on + strand, within GFF2457 at 513.941 kb on + strand, within GFF2457 at 513.941 kb on + strand, within GFF2457 at 513.942 kb on - strand, within GFF2457 at 514.955 kb on + strand, within GFF2458 at 514.955 kb on + strand, within GFF2458 at 514.956 kb on - strand, within GFF2458 at 515.063 kb on + strand, within GFF2458 at 515.064 kb on - strand, within GFF2458 at 515.064 kb on - strand, within GFF2458
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 512,938 + GFF2455 0.24 -2.6 512,938 + GFF2455 0.24 +1.1 512,938 + GFF2455 0.24 -1.9 512,939 - GFF2455 0.24 +0.1 512,939 - GFF2455 0.24 -3.1 512,939 - GFF2455 0.24 -0.3 512,939 - GFF2455 0.24 +0.5 512,941 + GFF2455 0.24 -1.6 512,942 - GFF2455 0.24 +0.7 512,942 - GFF2455 0.24 +1.0 512,942 - GFF2455 0.24 +0.2 512,942 - GFF2455 0.24 -0.7 512,942 - GFF2455 0.24 +0.9 513,061 + GFF2455 0.42 -0.3 513,062 - GFF2455 0.42 -2.2 513,062 - GFF2455 0.42 +0.6 513,062 - GFF2455 0.42 +0.9 513,062 - GFF2455 0.42 -0.6 513,089 - GFF2455 0.46 -0.9 513,089 - GFF2455 0.46 -3.9 513,578 - -0.3 513,941 + GFF2457 0.52 -1.5 513,941 + GFF2457 0.52 +0.3 513,941 + GFF2457 0.52 +1.8 513,942 - GFF2457 0.52 +0.1 514,955 + GFF2458 0.42 +2.1 514,955 + GFF2458 0.42 -2.5 514,956 - GFF2458 0.42 -0.2 515,063 + GFF2458 0.52 +0.7 515,064 - GFF2458 0.52 +2.1 515,064 - GFF2458 0.52 -2.2
Or see this region's nucleotide sequence