Strain Fitness in Variovorax sp. SCN45 around GFF2437

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2435 and GFF2436 overlap by 4 nucleotidesGFF2436 and GFF2437 are separated by 48 nucleotidesGFF2437 and GFF2438 are separated by 16 nucleotides GFF2435 - FIG138928: iron-regulated membrane protein, at 485,585 to 487,261 GFF2435 GFF2436 - no description, at 487,258 to 487,620 GFF2436 GFF2437 - hypothetical protein, at 487,669 to 488,322 GFF2437 GFF2438 - Ferrichrome-iron receptor, at 488,339 to 490,795 GFF2438 Position (kb) 487 488 489Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 486.719 kb on + strand, within GFF2435at 486.719 kb on + strand, within GFF2435at 486.720 kb on - strand, within GFF2435at 486.720 kb on - strand, within GFF2435at 487.270 kb on + strandat 487.271 kb on - strandat 487.271 kb on - strandat 487.271 kb on - strandat 487.271 kb on - strandat 487.271 kb on - strandat 487.271 kb on - strandat 487.300 kb on + strand, within GFF2436at 487.300 kb on + strand, within GFF2436at 487.459 kb on - strand, within GFF2436at 487.459 kb on - strand, within GFF2436at 487.529 kb on - strand, within GFF2436at 487.753 kb on + strand, within GFF2437at 487.753 kb on + strand, within GFF2437at 487.754 kb on - strand, within GFF2437at 487.987 kb on + strand, within GFF2437at 487.988 kb on - strand, within GFF2437at 488.200 kb on + strand, within GFF2437at 488.200 kb on + strand, within GFF2437at 488.200 kb on + strand, within GFF2437at 488.201 kb on - strand, within GFF2437at 488.257 kb on + strandat 488.341 kb on - strandat 488.349 kb on + strandat 488.349 kb on + strandat 488.349 kb on + strandat 488.350 kb on - strandat 488.385 kb on + strandat 488.385 kb on + strandat 488.388 kb on + strandat 488.389 kb on - strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.418 kb on + strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.419 kb on - strandat 488.502 kb on + strandat 488.502 kb on + strandat 488.503 kb on - strandat 488.535 kb on + strandat 488.697 kb on + strand, within GFF2438at 488.697 kb on + strand, within GFF2438at 488.698 kb on - strand, within GFF2438at 488.808 kb on + strand, within GFF2438at 488.808 kb on + strand, within GFF2438at 488.809 kb on - strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.817 kb on + strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.818 kb on - strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.853 kb on + strand, within GFF2438at 488.854 kb on - strand, within GFF2438at 488.854 kb on - strand, within GFF2438at 488.854 kb on - strand, within GFF2438at 488.854 kb on - strand, within GFF2438at 488.985 kb on + strand, within GFF2438at 488.985 kb on + strand, within GFF2438at 489.012 kb on + strand, within GFF2438at 489.013 kb on - strand, within GFF2438at 489.081 kb on + strand, within GFF2438at 489.081 kb on + strand, within GFF2438at 489.081 kb on + strand, within GFF2438at 489.081 kb on + strand, within GFF2438at 489.082 kb on - strand, within GFF2438at 489.106 kb on - strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.159 kb on + strand, within GFF2438at 489.160 kb on - strand, within GFF2438at 489.160 kb on - strand, within GFF2438at 489.240 kb on + strand, within GFF2438

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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486,719 + GFF2435 0.68 +1.2
486,719 + GFF2435 0.68 +1.3
486,720 - GFF2435 0.68 +2.1
486,720 - GFF2435 0.68 -0.7
487,270 + -0.3
487,271 - +2.7
487,271 - -0.5
487,271 - +0.2
487,271 - +0.3
487,271 - +0.6
487,271 - +0.5
487,300 + GFF2436 0.12 -0.9
487,300 + GFF2436 0.12 +2.1
487,459 - GFF2436 0.55 -0.3
487,459 - GFF2436 0.55 +1.9
487,529 - GFF2436 0.75 +0.5
487,753 + GFF2437 0.13 -1.3
487,753 + GFF2437 0.13 -0.6
487,754 - GFF2437 0.13 -0.2
487,987 + GFF2437 0.49 +1.1
487,988 - GFF2437 0.49 -1.9
488,200 + GFF2437 0.81 +2.2
488,200 + GFF2437 0.81 -0.3
488,200 + GFF2437 0.81 +0.7
488,201 - GFF2437 0.81 -0.9
488,257 + -1.9
488,341 - -0.6
488,349 + +3.6
488,349 + +0.1
488,349 + -2.0
488,350 - -0.9
488,385 + -1.3
488,385 + -2.5
488,388 + +2.1
488,389 - -0.4
488,418 + -2.0
488,418 + -0.1
488,418 + +0.8
488,418 + -0.2
488,418 + +1.2
488,418 + -0.3
488,418 + +0.8
488,418 + -2.0
488,418 + -0.3
488,418 + -0.0
488,418 + -0.1
488,418 + -0.8
488,418 + +1.1
488,418 + +0.3
488,418 + +0.2
488,418 + +0.1
488,419 - -1.8
488,419 - -0.9
488,419 - -2.8
488,419 - -0.7
488,419 - +1.8
488,419 - +0.9
488,419 - +0.7
488,502 + -0.6
488,502 + -3.9
488,503 - -0.8
488,535 + -2.6
488,697 + GFF2438 0.15 -2.6
488,697 + GFF2438 0.15 -1.5
488,698 - GFF2438 0.15 +0.0
488,808 + GFF2438 0.19 +0.2
488,808 + GFF2438 0.19 -2.3
488,809 - GFF2438 0.19 -1.1
488,817 + GFF2438 0.19 +1.9
488,817 + GFF2438 0.19 +1.5
488,817 + GFF2438 0.19 +1.3
488,817 + GFF2438 0.19 +0.1
488,817 + GFF2438 0.19 -2.8
488,817 + GFF2438 0.19 +0.3
488,817 + GFF2438 0.19 +2.3
488,818 - GFF2438 0.19 +0.6
488,818 - GFF2438 0.19 +1.6
488,818 - GFF2438 0.19 +1.4
488,818 - GFF2438 0.19 -1.4
488,818 - GFF2438 0.19 -2.0
488,818 - GFF2438 0.19 -2.5
488,818 - GFF2438 0.19 +1.1
488,853 + GFF2438 0.21 -3.6
488,853 + GFF2438 0.21 +1.1
488,853 + GFF2438 0.21 -0.5
488,853 + GFF2438 0.21 +1.8
488,853 + GFF2438 0.21 -0.3
488,853 + GFF2438 0.21 +1.9
488,853 + GFF2438 0.21 -0.4
488,854 - GFF2438 0.21 +1.2
488,854 - GFF2438 0.21 +1.1
488,854 - GFF2438 0.21 -0.3
488,854 - GFF2438 0.21 -0.8
488,985 + GFF2438 0.26 -0.2
488,985 + GFF2438 0.26 -1.6
489,012 + GFF2438 0.27 -2.6
489,013 - GFF2438 0.27 +0.8
489,081 + GFF2438 0.30 +0.5
489,081 + GFF2438 0.30 +1.5
489,081 + GFF2438 0.30 -0.3
489,081 + GFF2438 0.30 +0.5
489,082 - GFF2438 0.30 -1.3
489,106 - GFF2438 0.31 +0.6
489,159 + GFF2438 0.33 -0.5
489,159 + GFF2438 0.33 +1.2
489,159 + GFF2438 0.33 -3.5
489,159 + GFF2438 0.33 -0.1
489,159 + GFF2438 0.33 -1.3
489,159 + GFF2438 0.33 -0.5
489,159 + GFF2438 0.33 +0.4
489,160 - GFF2438 0.33 +0.9
489,160 - GFF2438 0.33 +2.7
489,240 + GFF2438 0.37 -0.3

Or see this region's nucleotide sequence