Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2399 and GFF2400 are separated by 73 nucleotides GFF2400 and GFF2401 overlap by 4 nucleotides GFF2401 and GFF2402 are separated by 129 nucleotides
GFF2399 - TonB-dependent receptor, at 450,935 to 453,469
GFF2399
GFF2400 - no description, at 453,543 to 454,592
GFF2400
GFF2401 - hypothetical protein, at 454,589 to 455,161
GFF2401
GFF2402 - hypothetical protein, at 455,291 to 455,752
GFF2402
Position (kb) 453
454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.641 kb on - strand, within GFF2399 at 452.796 kb on + strand, within GFF2399 at 452.796 kb on + strand, within GFF2399 at 452.797 kb on - strand, within GFF2399 at 452.910 kb on + strand, within GFF2399 at 452.910 kb on + strand, within GFF2399 at 452.911 kb on - strand, within GFF2399 at 453.220 kb on - strand at 453.220 kb on - strand at 453.220 kb on - strand at 453.250 kb on - strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.539 kb on + strand at 453.540 kb on - strand at 453.540 kb on - strand at 453.540 kb on - strand at 453.540 kb on - strand at 453.544 kb on + strand at 453.544 kb on + strand at 453.545 kb on - strand at 453.545 kb on - strand at 453.704 kb on - strand, within GFF2400 at 454.195 kb on + strand, within GFF2400 at 454.195 kb on + strand, within GFF2400 at 454.195 kb on + strand, within GFF2400 at 454.196 kb on - strand, within GFF2400 at 454.223 kb on - strand, within GFF2400 at 455.022 kb on + strand, within GFF2401 at 455.023 kb on - strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.058 kb on - strand, within GFF2401 at 455.058 kb on - strand, within GFF2401 at 455.278 kb on + strand at 455.341 kb on - strand, within GFF2402 at 455.366 kb on + strand, within GFF2402 at 455.367 kb on - strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.564 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.572 kb on - strand, within GFF2402 at 455.572 kb on - strand, within GFF2402 at 455.572 kb on - strand, within GFF2402
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 452,641 - GFF2399 0.67 +0.2 452,641 - GFF2399 0.67 +0.5 452,641 - GFF2399 0.67 +0.2 452,641 - GFF2399 0.67 +1.3 452,641 - GFF2399 0.67 -1.0 452,641 - GFF2399 0.67 -1.3 452,796 + GFF2399 0.73 -1.4 452,796 + GFF2399 0.73 -0.5 452,797 - GFF2399 0.73 -0.5 452,910 + GFF2399 0.78 -0.7 452,910 + GFF2399 0.78 -1.5 452,911 - GFF2399 0.78 +1.5 453,220 - -0.1 453,220 - -1.0 453,220 - -0.3 453,250 - -3.0 453,539 + -1.3 453,539 + +0.2 453,539 + -0.5 453,539 + -1.5 453,539 + -2.9 453,539 + +0.6 453,540 - -2.2 453,540 - -2.0 453,540 - +0.1 453,540 - -0.9 453,544 + -0.4 453,544 + -1.2 453,545 - -1.2 453,545 - +0.5 453,704 - GFF2400 0.15 -0.4 454,195 + GFF2400 0.62 -3.2 454,195 + GFF2400 0.62 -0.9 454,195 + GFF2400 0.62 -0.7 454,196 - GFF2400 0.62 +2.1 454,223 - GFF2400 0.65 -2.6 455,022 + GFF2401 0.76 -0.5 455,023 - GFF2401 0.76 +0.4 455,034 + GFF2401 0.78 +1.4 455,034 + GFF2401 0.78 -0.8 455,034 + GFF2401 0.78 -1.0 455,035 - GFF2401 0.78 -2.8 455,035 - GFF2401 0.78 -3.1 455,035 - GFF2401 0.78 -0.4 455,058 - GFF2401 0.82 -2.6 455,058 - GFF2401 0.82 -1.4 455,278 + -3.0 455,341 - GFF2402 0.11 -1.0 455,366 + GFF2402 0.16 -1.1 455,367 - GFF2402 0.16 -0.5 455,534 + GFF2402 0.53 +0.9 455,534 + GFF2402 0.53 +0.7 455,534 + GFF2402 0.53 +0.3 455,534 + GFF2402 0.53 +0.1 455,534 + GFF2402 0.53 -1.8 455,535 - GFF2402 0.53 -0.9 455,535 - GFF2402 0.53 -0.0 455,535 - GFF2402 0.53 +0.5 455,535 - GFF2402 0.53 -2.2 455,535 - GFF2402 0.53 +0.7 455,535 - GFF2402 0.53 +0.4 455,535 - GFF2402 0.53 +0.5 455,564 + GFF2402 0.59 -1.7 455,571 + GFF2402 0.61 -2.3 455,571 + GFF2402 0.61 -2.3 455,571 + GFF2402 0.61 -0.5 455,572 - GFF2402 0.61 -1.4 455,572 - GFF2402 0.61 -1.3 455,572 - GFF2402 0.61 -2.3
Or see this region's nucleotide sequence