Strain Fitness in Variovorax sp. SCN45 around GFF232

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF230 and GFF231 are separated by 62 nucleotidesGFF231 and GFF232 are separated by 45 nucleotidesGFF232 and GFF233 are separated by 206 nucleotidesGFF233 and GFF234 are separated by 37 nucleotides GFF230 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 258,600 to 259,382 GFF230 GFF231 - DNA ligase (ATP) (EC 6.5.1.1), at 259,445 to 260,287 GFF231 GFF232 - Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18), at 260,333 to 262,639 GFF232 GFF233 - Putative activity regulator of membrane protease YbbK, at 262,846 to 263,271 GFF233 GFF234 - Protein QmcA (possibly involved in integral membrane quality control), at 263,309 to 264,238 GFF234 Position (kb) 260 261 262 263Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 259.335 kb on + strandat 259.381 kb on - strandat 259.427 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.431 kb on + strandat 259.432 kb on - strandat 259.432 kb on - strandat 259.432 kb on - strandat 259.432 kb on - strandat 259.438 kb on + strandat 259.438 kb on + strandat 259.438 kb on + strandat 259.438 kb on + strandat 259.439 kb on - strandat 259.439 kb on - strandat 259.439 kb on - strandat 259.439 kb on - strandat 259.547 kb on + strand, within GFF231at 259.548 kb on - strand, within GFF231at 259.548 kb on - strand, within GFF231at 259.592 kb on + strand, within GFF231at 259.593 kb on - strand, within GFF231at 259.593 kb on - strand, within GFF231at 259.611 kb on - strand, within GFF231at 259.611 kb on - strand, within GFF231at 259.611 kb on - strand, within GFF231at 259.611 kb on - strand, within GFF231at 260.216 kb on + strandat 260.216 kb on + strandat 260.216 kb on + strandat 260.217 kb on - strandat 260.217 kb on - strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.334 kb on + strandat 260.335 kb on - strandat 260.335 kb on - strandat 260.335 kb on - strandat 260.364 kb on + strandat 260.364 kb on + strandat 260.365 kb on - strandat 260.365 kb on - strandat 260.365 kb on - strandat 260.365 kb on - strandat 260.365 kb on - strandat 260.365 kb on - strandat 260.367 kb on + strandat 260.368 kb on - strandat 260.368 kb on - strandat 260.369 kb on - strandat 260.466 kb on + strandat 260.652 kb on + strand, within GFF232at 260.652 kb on + strand, within GFF232at 260.652 kb on + strand, within GFF232at 260.652 kb on + strand, within GFF232at 260.652 kb on + strand, within GFF232at 260.653 kb on - strand, within GFF232at 260.653 kb on - strand, within GFF232at 260.691 kb on + strand, within GFF232at 260.691 kb on + strand, within GFF232at 260.691 kb on + strand, within GFF232at 260.691 kb on + strand, within GFF232at 260.691 kb on + strand, within GFF232at 260.692 kb on - strand, within GFF232at 260.692 kb on - strand, within GFF232at 260.692 kb on - strand, within GFF232at 260.739 kb on + strand, within GFF232at 260.799 kb on + strand, within GFF232at 260.800 kb on - strand, within GFF232at 260.887 kb on - strand, within GFF232at 260.887 kb on - strand, within GFF232at 261.330 kb on + strand, within GFF232at 261.360 kb on + strand, within GFF232at 261.361 kb on - strand, within GFF232at 261.361 kb on - strand, within GFF232at 261.528 kb on + strand, within GFF232at 261.624 kb on + strand, within GFF232at 261.624 kb on + strand, within GFF232at 261.624 kb on + strand, within GFF232at 261.625 kb on - strand, within GFF232at 261.639 kb on + strand, within GFF232at 261.639 kb on + strand, within GFF232at 261.640 kb on - strand, within GFF232at 262.150 kb on - strand, within GFF232at 262.150 kb on - strand, within GFF232at 262.167 kb on + strand, within GFF232at 262.212 kb on + strand, within GFF232at 262.212 kb on + strand, within GFF232at 262.212 kb on + strand, within GFF232at 262.213 kb on - strand, within GFF232at 262.213 kb on - strand, within GFF232at 262.338 kb on + strand, within GFF232at 262.338 kb on + strand, within GFF232at 262.339 kb on - strand, within GFF232at 262.339 kb on - strand, within GFF232at 262.344 kb on + strand, within GFF232at 262.344 kb on + strand, within GFF232at 262.344 kb on + strand, within GFF232at 262.344 kb on + strand, within GFF232at 262.344 kb on + strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.509 kb on + strandat 262.510 kb on - strandat 262.510 kb on - strandat 262.683 kb on - strandat 262.683 kb on - strandat 262.683 kb on - strandat 262.683 kb on - strandat 262.697 kb on + strandat 262.766 kb on + strandat 262.766 kb on + strandat 262.767 kb on - strandat 262.767 kb on - strandat 262.772 kb on + strandat 262.918 kb on + strand, within GFF233at 262.918 kb on + strand, within GFF233at 262.918 kb on + strand, within GFF233at 263.038 kb on + strand, within GFF233at 263.038 kb on + strand, within GFF233at 263.039 kb on - strand, within GFF233at 263.269 kb on + strandat 263.269 kb on + strandat 263.270 kb on - strandat 263.270 kb on - strandat 263.284 kb on + strandat 263.284 kb on + strandat 263.285 kb on - strandat 263.420 kb on + strand, within GFF234at 263.420 kb on + strand, within GFF234at 263.420 kb on + strand, within GFF234at 263.420 kb on + strand, within GFF234at 263.420 kb on + strand, within GFF234at 263.421 kb on - strand, within GFF234at 263.480 kb on + strand, within GFF234at 263.480 kb on + strand, within GFF234at 263.481 kb on - strand, within GFF234at 263.481 kb on - strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.574 kb on - strand, within GFF234at 263.574 kb on - strand, within GFF234at 263.607 kb on - strand, within GFF234at 263.607 kb on - strand, within GFF234at 263.607 kb on - strand, within GFF234at 263.607 kb on - strand, within GFF234at 263.621 kb on + strand, within GFF234at 263.621 kb on + strand, within GFF234at 263.621 kb on + strand, within GFF234at 263.621 kb on + strand, within GFF234at 263.621 kb on + strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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259,335 + +1.6
259,381 - +2.9
259,427 + -0.2
259,431 + -0.7
259,431 + -0.9
259,431 + +0.4
259,431 + +0.4
259,431 + -0.3
259,431 + -1.7
259,431 + -2.4
259,432 - +2.3
259,432 - +0.1
259,432 - -0.4
259,432 - -0.2
259,438 + +0.7
259,438 + +0.2
259,438 + +0.5
259,438 + -1.4
259,439 - -0.9
259,439 - -1.4
259,439 - +1.5
259,439 - +0.1
259,547 + GFF231 0.12 -2.2
259,548 - GFF231 0.12 -2.4
259,548 - GFF231 0.12 +0.1
259,592 + GFF231 0.17 +0.1
259,593 - GFF231 0.18 -0.8
259,593 - GFF231 0.18 +1.1
259,611 - GFF231 0.20 -0.1
259,611 - GFF231 0.20 +0.4
259,611 - GFF231 0.20 -0.9
259,611 - GFF231 0.20 +0.3
260,216 + -0.4
260,216 + +1.2
260,216 + +2.9
260,217 - -2.8
260,217 - -1.4
260,334 + +0.8
260,334 + +1.4
260,334 + +1.3
260,334 + -0.8
260,334 + -1.0
260,334 + -3.6
260,334 + -0.4
260,335 - +0.2
260,335 - +1.2
260,335 - +0.1
260,364 + +1.6
260,364 + -0.7
260,365 - +0.1
260,365 - +0.1
260,365 - +0.6
260,365 - -0.7
260,365 - +0.6
260,365 - +0.1
260,367 + +1.6
260,368 - -0.4
260,368 - -0.4
260,369 - +1.6
260,466 + +1.6
260,652 + GFF232 0.14 +1.6
260,652 + GFF232 0.14 +0.1
260,652 + GFF232 0.14 +0.1
260,652 + GFF232 0.14 +0.6
260,652 + GFF232 0.14 +0.1
260,653 - GFF232 0.14 -0.7
260,653 - GFF232 0.14 +1.6
260,691 + GFF232 0.16 +0.6
260,691 + GFF232 0.16 +0.6
260,691 + GFF232 0.16 -0.4
260,691 + GFF232 0.16 +1.6
260,691 + GFF232 0.16 +0.6
260,692 - GFF232 0.16 -0.4
260,692 - GFF232 0.16 +1.6
260,692 - GFF232 0.16 -0.4
260,739 + GFF232 0.18 +1.6
260,799 + GFF232 0.20 +0.1
260,800 - GFF232 0.20 +1.6
260,887 - GFF232 0.24 +1.6
260,887 - GFF232 0.24 +1.6
261,330 + GFF232 0.43 +1.6
261,360 + GFF232 0.45 +0.6
261,361 - GFF232 0.45 +0.1
261,361 - GFF232 0.45 +1.6
261,528 + GFF232 0.52 +1.6
261,624 + GFF232 0.56 +0.1
261,624 + GFF232 0.56 +1.6
261,624 + GFF232 0.56 -0.9
261,625 - GFF232 0.56 +0.1
261,639 + GFF232 0.57 +0.6
261,639 + GFF232 0.57 +0.1
261,640 - GFF232 0.57 -0.4
262,150 - GFF232 0.79 -1.2
262,150 - GFF232 0.79 -0.4
262,167 + GFF232 0.79 +0.6
262,212 + GFF232 0.81 +0.1
262,212 + GFF232 0.81 -1.4
262,212 + GFF232 0.81 +1.6
262,213 - GFF232 0.81 +0.1
262,213 - GFF232 0.81 +1.6
262,338 + GFF232 0.87 +0.6
262,338 + GFF232 0.87 +0.6
262,339 - GFF232 0.87 -0.7
262,339 - GFF232 0.87 +1.6
262,344 + GFF232 0.87 +0.1
262,344 + GFF232 0.87 +1.6
262,344 + GFF232 0.87 +1.6
262,344 + GFF232 0.87 +1.6
262,344 + GFF232 0.87 -0.4
262,345 - GFF232 0.87 +1.6
262,345 - GFF232 0.87 -0.9
262,345 - GFF232 0.87 +0.6
262,345 - GFF232 0.87 -0.4
262,345 - GFF232 0.87 +0.6
262,345 - GFF232 0.87 +1.6
262,345 - GFF232 0.87 +0.1
262,345 - GFF232 0.87 -1.2
262,509 + +0.6
262,510 - +0.1
262,510 - +1.6
262,683 - -2.3
262,683 - +0.6
262,683 - +0.3
262,683 - -1.2
262,697 + -0.1
262,766 + +1.6
262,766 + +0.8
262,767 - +0.8
262,767 - -3.4
262,772 + +0.3
262,918 + GFF233 0.17 +0.0
262,918 + GFF233 0.17 -1.1
262,918 + GFF233 0.17 -1.1
263,038 + GFF233 0.45 -2.8
263,038 + GFF233 0.45 +1.8
263,039 - GFF233 0.45 +2.2
263,269 + -2.9
263,269 + -1.2
263,270 - -2.2
263,270 - +1.1
263,284 + +0.3
263,284 + -0.4
263,285 - -1.1
263,420 + GFF234 0.12 -1.5
263,420 + GFF234 0.12 -2.8
263,420 + GFF234 0.12 +2.1
263,420 + GFF234 0.12 +1.4
263,420 + GFF234 0.12 +1.0
263,421 - GFF234 0.12 -0.9
263,480 + GFF234 0.18 -1.0
263,480 + GFF234 0.18 +0.1
263,481 - GFF234 0.18 +1.5
263,481 - GFF234 0.18 -2.4
263,573 + GFF234 0.28 +1.8
263,573 + GFF234 0.28 -0.9
263,573 + GFF234 0.28 -0.4
263,573 + GFF234 0.28 +0.6
263,573 + GFF234 0.28 -1.1
263,573 + GFF234 0.28 -0.3
263,574 - GFF234 0.28 +0.1
263,574 - GFF234 0.28 -0.4
263,607 - GFF234 0.32 -2.4
263,607 - GFF234 0.32 +0.4
263,607 - GFF234 0.32 -2.2
263,607 - GFF234 0.32 -0.4
263,621 + GFF234 0.34 -0.9
263,621 + GFF234 0.34 -2.6
263,621 + GFF234 0.34 -2.4
263,621 + GFF234 0.34 +2.2
263,621 + GFF234 0.34 -0.6
263,622 - GFF234 0.34 -1.6
263,622 - GFF234 0.34 +1.1
263,622 - GFF234 0.34 -0.4
263,622 - GFF234 0.34 +2.0
263,622 - GFF234 0.34 -1.1
263,622 - GFF234 0.34 -0.9
263,622 - GFF234 0.34 +0.1
263,622 - GFF234 0.34 +0.3
263,622 - GFF234 0.34 +0.4
263,622 - GFF234 0.34 -0.9

Or see this region's nucleotide sequence