Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2286 and GFF2287 overlap by 4 nucleotides GFF2287 and GFF2288 overlap by 4 nucleotides GFF2288 and GFF2289 are separated by 0 nucleotides GFF2289 and GFF2290 are separated by 111 nucleotides
GFF2286 - BUG/TctC family periplasmic protein, at 341,399 to 342,394
GFF2286
GFF2287 - ortholog of Bordetella pertussis (BX470248) BP3300, at 342,391 to 343,353
GFF2287
GFF2288 - Glutathione-regulated potassium-efflux system protein KefC, at 343,350 to 345,206
GFF2288
GFF2289 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 345,207 to 345,914
GFF2289
GFF2290 - Chromosome partitioning protein ParA, at 346,026 to 346,646
GFF2290
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 342.469 kb on + strand at 342.469 kb on + strand at 342.469 kb on + strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.470 kb on - strand at 342.496 kb on + strand, within GFF2287 at 342.496 kb on + strand, within GFF2287 at 342.496 kb on + strand, within GFF2287 at 342.497 kb on - strand, within GFF2287 at 342.661 kb on + strand, within GFF2287 at 342.661 kb on + strand, within GFF2287 at 342.661 kb on + strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.662 kb on - strand, within GFF2287 at 342.688 kb on + strand, within GFF2287 at 342.688 kb on + strand, within GFF2287 at 342.689 kb on - strand, within GFF2287 at 342.814 kb on + strand, within GFF2287 at 342.814 kb on + strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.815 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.866 kb on - strand, within GFF2287 at 342.971 kb on - strand, within GFF2287 at 343.333 kb on + strand at 343.333 kb on + strand at 343.334 kb on - strand at 343.351 kb on + strand at 343.352 kb on - strand at 343.501 kb on + strand at 343.501 kb on + strand at 343.502 kb on - strand at 343.502 kb on - strand at 343.502 kb on - strand at 343.502 kb on - strand at 343.502 kb on - strand at 343.502 kb on - strand at 343.510 kb on + strand at 343.510 kb on + strand at 343.510 kb on + strand at 343.511 kb on - strand at 343.511 kb on - strand at 343.644 kb on + strand, within GFF2288 at 343.645 kb on - strand, within GFF2288 at 343.645 kb on - strand, within GFF2288 at 343.645 kb on - strand, within GFF2288 at 343.645 kb on - strand, within GFF2288 at 343.847 kb on - strand, within GFF2288 at 343.847 kb on - strand, within GFF2288 at 344.038 kb on + strand, within GFF2288 at 344.038 kb on + strand, within GFF2288 at 344.039 kb on - strand, within GFF2288 at 344.227 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.257 kb on + strand, within GFF2288 at 344.258 kb on - strand, within GFF2288 at 345.100 kb on + strand at 345.101 kb on - strand at 345.166 kb on + strand at 345.167 kb on - strand at 345.167 kb on - strand at 345.445 kb on + strand, within GFF2289 at 345.445 kb on + strand, within GFF2289 at 345.445 kb on + strand, within GFF2289 at 345.446 kb on - strand, within GFF2289 at 345.446 kb on - strand, within GFF2289 at 345.527 kb on - strand, within GFF2289 at 345.527 kb on - strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.535 kb on + strand, within GFF2289 at 345.536 kb on - strand, within GFF2289 at 345.536 kb on - strand, within GFF2289 at 345.536 kb on - strand, within GFF2289 at 345.550 kb on + strand, within GFF2289 at 345.550 kb on + strand, within GFF2289 at 345.550 kb on + strand, within GFF2289 at 345.550 kb on + strand, within GFF2289 at 345.551 kb on - strand, within GFF2289 at 345.551 kb on - strand, within GFF2289 at 345.625 kb on + strand, within GFF2289 at 345.626 kb on - strand, within GFF2289 at 345.683 kb on - strand, within GFF2289 at 345.685 kb on + strand, within GFF2289 at 345.685 kb on + strand, within GFF2289 at 345.685 kb on + strand, within GFF2289 at 345.686 kb on - strand, within GFF2289 at 345.686 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.773 kb on - strand, within GFF2289 at 345.781 kb on + strand, within GFF2289 at 345.781 kb on + strand, within GFF2289 at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.944 kb on + strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.945 kb on - strand at 345.989 kb on + strand at 345.990 kb on - strand at 346.025 kb on + strand at 346.025 kb on + strand at 346.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 342,469 + -2.3 342,469 + -1.2 342,469 + +1.8 342,470 - +0.6 342,470 - -1.4 342,470 - +0.3 342,470 - -0.4 342,470 - -0.1 342,496 + GFF2287 0.11 -1.4 342,496 + GFF2287 0.11 +2.0 342,496 + GFF2287 0.11 +3.1 342,497 - GFF2287 0.11 -1.1 342,661 + GFF2287 0.28 +0.3 342,661 + GFF2287 0.28 -1.0 342,661 + GFF2287 0.28 +0.8 342,662 - GFF2287 0.28 +0.1 342,662 - GFF2287 0.28 -1.2 342,662 - GFF2287 0.28 -3.3 342,662 - GFF2287 0.28 +3.0 342,662 - GFF2287 0.28 +1.1 342,662 - GFF2287 0.28 -0.1 342,688 + GFF2287 0.31 +0.1 342,688 + GFF2287 0.31 -1.1 342,689 - GFF2287 0.31 -1.5 342,814 + GFF2287 0.44 +1.2 342,814 + GFF2287 0.44 -0.3 342,815 - GFF2287 0.44 -1.0 342,815 - GFF2287 0.44 +0.1 342,815 - GFF2287 0.44 -1.6 342,815 - GFF2287 0.44 +0.7 342,815 - GFF2287 0.44 +0.0 342,815 - GFF2287 0.44 -1.1 342,866 - GFF2287 0.49 -0.3 342,866 - GFF2287 0.49 +0.1 342,866 - GFF2287 0.49 +0.5 342,866 - GFF2287 0.49 +0.1 342,971 - GFF2287 0.60 +0.5 343,333 + -0.9 343,333 + +2.4 343,334 - -1.5 343,351 + -3.4 343,352 - +0.7 343,501 + -1.7 343,501 + +0.8 343,502 - +0.7 343,502 - -1.4 343,502 - +2.1 343,502 - -0.6 343,502 - -2.1 343,502 - -1.4 343,510 + -3.4 343,510 + +0.1 343,510 + -2.2 343,511 - +1.1 343,511 - +3.2 343,644 + GFF2288 0.16 -1.9 343,645 - GFF2288 0.16 +2.1 343,645 - GFF2288 0.16 -3.1 343,645 - GFF2288 0.16 -0.0 343,645 - GFF2288 0.16 -0.2 343,847 - GFF2288 0.27 -0.4 343,847 - GFF2288 0.27 -2.7 344,038 + GFF2288 0.37 -0.0 344,038 + GFF2288 0.37 +0.1 344,039 - GFF2288 0.37 -0.8 344,227 + GFF2288 0.47 -0.2 344,257 + GFF2288 0.49 -0.9 344,257 + GFF2288 0.49 -2.2 344,257 + GFF2288 0.49 -0.2 344,257 + GFF2288 0.49 -0.6 344,257 + GFF2288 0.49 -0.8 344,257 + GFF2288 0.49 +1.2 344,257 + GFF2288 0.49 -3.8 344,258 - GFF2288 0.49 -1.0 345,100 + -2.9 345,101 - -2.4 345,166 + -4.4 345,167 - -0.4 345,167 - +1.2 345,445 + GFF2289 0.34 -1.6 345,445 + GFF2289 0.34 +0.9 345,445 + GFF2289 0.34 -1.6 345,446 - GFF2289 0.34 -1.2 345,446 - GFF2289 0.34 -1.2 345,527 - GFF2289 0.45 +1.2 345,527 - GFF2289 0.45 +0.5 345,535 + GFF2289 0.46 -0.1 345,535 + GFF2289 0.46 -1.0 345,535 + GFF2289 0.46 -0.5 345,535 + GFF2289 0.46 +2.1 345,535 + GFF2289 0.46 +2.1 345,535 + GFF2289 0.46 -0.5 345,536 - GFF2289 0.46 +0.9 345,536 - GFF2289 0.46 +0.2 345,536 - GFF2289 0.46 +0.0 345,550 + GFF2289 0.48 +0.5 345,550 + GFF2289 0.48 +0.3 345,550 + GFF2289 0.48 -3.3 345,550 + GFF2289 0.48 -0.3 345,551 - GFF2289 0.49 -1.6 345,551 - GFF2289 0.49 -1.6 345,625 + GFF2289 0.59 +0.4 345,626 - GFF2289 0.59 -1.2 345,683 - GFF2289 0.67 -1.2 345,685 + GFF2289 0.68 -0.9 345,685 + GFF2289 0.68 +0.1 345,685 + GFF2289 0.68 +0.0 345,686 - GFF2289 0.68 -0.2 345,686 - GFF2289 0.68 -1.9 345,773 - GFF2289 0.80 -4.3 345,773 - GFF2289 0.80 +1.4 345,773 - GFF2289 0.80 -1.8 345,773 - GFF2289 0.80 +1.3 345,781 + GFF2289 0.81 -1.7 345,781 + GFF2289 0.81 -0.1 345,880 + +0.5 345,880 + +0.3 345,880 + -2.9 345,880 + -3.5 345,880 + +0.5 345,880 + +2.4 345,880 + +0.7 345,881 - -2.2 345,881 - -1.6 345,881 - +1.0 345,881 - -2.2 345,881 - -1.1 345,944 + -1.7 345,944 + -0.9 345,944 + +0.9 345,944 + -3.9 345,944 + -1.1 345,944 + -2.0 345,944 + -1.4 345,944 + -2.5 345,944 + -0.5 345,944 + -1.2 345,944 + -0.5 345,944 + +1.6 345,945 - +0.1 345,945 - +0.0 345,945 - -2.2 345,945 - +0.7 345,945 - -0.5 345,945 - -3.3 345,945 - -2.6 345,945 - +0.0 345,945 - -4.0 345,945 - -0.2 345,945 - -0.4 345,945 - -0.5 345,989 + -0.7 345,990 - -1.5 346,025 + -2.0 346,025 + -2.7 346,026 - -1.2
Or see this region's nucleotide sequence