Strain Fitness in Variovorax sp. SCN45 around GFF226

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF225 and GFF226 are separated by 16 nucleotidesGFF226 and GFF227 overlap by 1 nucleotides GFF225 - Permeases of the major facilitator superfamily, at 251,639 to 252,835 GFF225 GFF226 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 252,852 to 254,492 GFF226 GFF227 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 254,492 to 255,532 GFF227 Position (kb) 252 253 254 255Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 251.980 kb on - strand, within GFF225at 251.980 kb on - strand, within GFF225at 252.079 kb on - strand, within GFF225at 252.140 kb on - strand, within GFF225at 252.140 kb on - strand, within GFF225at 252.148 kb on - strand, within GFF225at 252.148 kb on - strand, within GFF225at 252.148 kb on - strand, within GFF225at 252.148 kb on - strand, within GFF225at 252.148 kb on - strand, within GFF225at 252.169 kb on - strand, within GFF225at 252.411 kb on + strand, within GFF225at 252.411 kb on + strand, within GFF225at 252.412 kb on - strand, within GFF225at 252.412 kb on - strand, within GFF225at 252.412 kb on - strand, within GFF225at 252.412 kb on - strand, within GFF225at 252.412 kb on - strand, within GFF225at 252.412 kb on - strand, within GFF225at 252.651 kb on + strand, within GFF225at 252.651 kb on + strand, within GFF225at 252.651 kb on + strand, within GFF225at 252.652 kb on - strand, within GFF225at 252.652 kb on - strand, within GFF225at 252.660 kb on + strand, within GFF225at 252.660 kb on + strand, within GFF225at 252.660 kb on + strand, within GFF225at 252.660 kb on + strand, within GFF225at 252.660 kb on + strand, within GFF225at 252.661 kb on - strand, within GFF225at 252.661 kb on - strand, within GFF225at 252.661 kb on - strand, within GFF225at 252.661 kb on - strand, within GFF225at 252.661 kb on - strand, within GFF225at 252.661 kb on - strand, within GFF225at 252.661 kb on - strand, within GFF225at 252.853 kb on + strandat 252.853 kb on + strandat 252.887 kb on + strandat 252.887 kb on + strandat 252.888 kb on - strandat 252.888 kb on - strandat 252.888 kb on - strandat 252.888 kb on - strandat 252.888 kb on - strandat 252.888 kb on - strandat 252.888 kb on - strandat 252.888 kb on - strandat 252.890 kb on - strandat 252.890 kb on - strandat 252.890 kb on - strandat 252.890 kb on - strandat 253.015 kb on + strandat 253.015 kb on + strandat 253.015 kb on + strandat 253.015 kb on + strandat 253.015 kb on + strandat 253.015 kb on + strandat 253.016 kb on - strand, within GFF226at 253.016 kb on - strand, within GFF226at 253.016 kb on - strand, within GFF226at 253.016 kb on - strand, within GFF226at 253.016 kb on - strand, within GFF226at 253.016 kb on - strand, within GFF226at 253.016 kb on - strand, within GFF226at 253.016 kb on - strand, within GFF226at 253.296 kb on + strand, within GFF226at 253.296 kb on + strand, within GFF226at 253.297 kb on - strand, within GFF226at 253.481 kb on - strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.612 kb on + strand, within GFF226at 253.613 kb on - strand, within GFF226at 253.613 kb on - strand, within GFF226at 253.718 kb on - strand, within GFF226at 253.718 kb on - strand, within GFF226at 253.718 kb on - strand, within GFF226at 253.855 kb on + strand, within GFF226at 253.855 kb on + strand, within GFF226at 253.855 kb on + strand, within GFF226at 253.855 kb on + strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 253.856 kb on - strand, within GFF226at 254.146 kb on + strand, within GFF226at 254.146 kb on + strand, within GFF226at 254.147 kb on - strand, within GFF226at 254.273 kb on - strand, within GFF226at 254.273 kb on - strand, within GFF226at 254.273 kb on - strand, within GFF226at 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.474 kb on + strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.475 kb on - strandat 254.611 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.820 kb on + strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.821 kb on - strand, within GFF227at 254.859 kb on + strand, within GFF227at 254.859 kb on + strand, within GFF227at 254.860 kb on - strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.952 kb on + strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.953 kb on - strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.975 kb on + strand, within GFF227at 254.976 kb on - strand, within GFF227at 254.976 kb on - strand, within GFF227at 254.976 kb on - strand, within GFF227at 254.976 kb on - strand, within GFF227at 255.021 kb on + strand, within GFF227at 255.021 kb on + strand, within GFF227at 255.022 kb on - strand, within GFF227at 255.108 kb on + strand, within GFF227at 255.108 kb on + strand, within GFF227at 255.109 kb on - strand, within GFF227at 255.109 kb on - strand, within GFF227at 255.109 kb on - strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.201 kb on + strand, within GFF227at 255.202 kb on - strand, within GFF227at 255.202 kb on - strand, within GFF227at 255.202 kb on - strand, within GFF227at 255.202 kb on - strand, within GFF227at 255.223 kb on - strand, within GFF227at 255.237 kb on + strand, within GFF227at 255.238 kb on - strand, within GFF227at 255.238 kb on - strand, within GFF227at 255.238 kb on - strand, within GFF227at 255.279 kb on + strand, within GFF227at 255.279 kb on + strand, within GFF227at 255.279 kb on + strand, within GFF227at 255.279 kb on + strand, within GFF227at 255.280 kb on - strand, within GFF227at 255.280 kb on - strand, within GFF227at 255.280 kb on - strand, within GFF227at 255.291 kb on + strand, within GFF227at 255.336 kb on + strand, within GFF227at 255.336 kb on + strand, within GFF227at 255.336 kb on + strand, within GFF227at 255.337 kb on - strand, within GFF227at 255.337 kb on - strand, within GFF227at 255.337 kb on - strand, within GFF227at 255.337 kb on - strand, within GFF227at 255.357 kb on + strand, within GFF227at 255.357 kb on + strand, within GFF227at 255.357 kb on + strand, within GFF227at 255.357 kb on + strand, within GFF227at 255.357 kb on + strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.358 kb on - strand, within GFF227at 255.361 kb on + strand, within GFF227at 255.361 kb on + strand, within GFF227at 255.361 kb on + strand, within GFF227at 255.361 kb on + strand, within GFF227at 255.361 kb on + strand, within GFF227at 255.362 kb on - strand, within GFF227at 255.362 kb on - strand, within GFF227at 255.362 kb on - strand, within GFF227at 255.372 kb on + strand, within GFF227at 255.373 kb on - strand, within GFF227at 255.373 kb on - strand, within GFF227

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
251,980 - GFF225 0.28 -1.3
251,980 - GFF225 0.28 -1.0
252,079 - GFF225 0.37 -0.6
252,140 - GFF225 0.42 -0.0
252,140 - GFF225 0.42 -2.4
252,148 - GFF225 0.43 +1.6
252,148 - GFF225 0.43 -1.2
252,148 - GFF225 0.43 -1.2
252,148 - GFF225 0.43 +1.0
252,148 - GFF225 0.43 -2.0
252,169 - GFF225 0.44 -2.8
252,411 + GFF225 0.64 +0.6
252,411 + GFF225 0.64 +0.6
252,412 - GFF225 0.65 +1.2
252,412 - GFF225 0.65 +2.2
252,412 - GFF225 0.65 +2.2
252,412 - GFF225 0.65 -0.5
252,412 - GFF225 0.65 -2.5
252,412 - GFF225 0.65 +0.8
252,651 + GFF225 0.85 +2.5
252,651 + GFF225 0.85 +1.9
252,651 + GFF225 0.85 -1.5
252,652 - GFF225 0.85 +0.0
252,652 - GFF225 0.85 +2.2
252,660 + GFF225 0.85 -2.1
252,660 + GFF225 0.85 -0.7
252,660 + GFF225 0.85 -0.7
252,660 + GFF225 0.85 +2.6
252,660 + GFF225 0.85 -1.5
252,661 - GFF225 0.85 -3.0
252,661 - GFF225 0.85 +2.1
252,661 - GFF225 0.85 -0.4
252,661 - GFF225 0.85 -0.0
252,661 - GFF225 0.85 +1.8
252,661 - GFF225 0.85 -0.7
252,661 - GFF225 0.85 +0.2
252,853 + -0.8
252,853 + +0.0
252,887 + -0.4
252,887 + +1.5
252,888 - -1.7
252,888 - +1.4
252,888 - -0.7
252,888 - -0.0
252,888 - -0.8
252,888 - -0.0
252,888 - +1.7
252,888 - -0.2
252,890 - +1.0
252,890 - +1.3
252,890 - -0.9
252,890 - -1.0
253,015 + -0.4
253,015 + -3.1
253,015 + -1.9
253,015 + -3.5
253,015 + -2.7
253,015 + +0.5
253,016 - GFF226 0.10 -1.8
253,016 - GFF226 0.10 +0.0
253,016 - GFF226 0.10 +0.3
253,016 - GFF226 0.10 -0.8
253,016 - GFF226 0.10 -3.5
253,016 - GFF226 0.10 -0.0
253,016 - GFF226 0.10 -0.6
253,016 - GFF226 0.10 +0.3
253,296 + GFF226 0.27 -2.1
253,296 + GFF226 0.27 -2.3
253,297 - GFF226 0.27 +0.2
253,481 - GFF226 0.38 -1.2
253,612 + GFF226 0.46 +0.1
253,612 + GFF226 0.46 -2.8
253,612 + GFF226 0.46 +0.2
253,612 + GFF226 0.46 -0.6
253,612 + GFF226 0.46 -2.9
253,612 + GFF226 0.46 +0.1
253,613 - GFF226 0.46 -1.1
253,613 - GFF226 0.46 -1.4
253,718 - GFF226 0.53 -2.3
253,718 - GFF226 0.53 -0.5
253,718 - GFF226 0.53 -0.7
253,855 + GFF226 0.61 -2.4
253,855 + GFF226 0.61 -0.2
253,855 + GFF226 0.61 -0.5
253,855 + GFF226 0.61 -0.9
253,856 - GFF226 0.61 -1.9
253,856 - GFF226 0.61 -3.6
253,856 - GFF226 0.61 -1.7
253,856 - GFF226 0.61 -1.1
253,856 - GFF226 0.61 +3.0
253,856 - GFF226 0.61 +1.4
253,856 - GFF226 0.61 -0.4
253,856 - GFF226 0.61 -4.3
254,146 + GFF226 0.79 +0.1
254,146 + GFF226 0.79 -1.3
254,147 - GFF226 0.79 -1.8
254,273 - GFF226 0.87 +1.0
254,273 - GFF226 0.87 -1.5
254,273 - GFF226 0.87 -1.8
254,474 + +0.2
254,474 + +0.4
254,474 + -1.4
254,474 + -2.9
254,474 + -2.4
254,474 + +2.2
254,474 + -1.2
254,474 + +1.6
254,475 - -0.4
254,475 - -0.1
254,475 - +0.1
254,475 - -0.7
254,475 - -1.0
254,475 - -0.8
254,475 - +1.6
254,611 + GFF227 0.11 -3.7
254,820 + GFF227 0.32 -4.1
254,820 + GFF227 0.32 -3.6
254,820 + GFF227 0.32 -1.7
254,820 + GFF227 0.32 -1.5
254,820 + GFF227 0.32 -0.7
254,820 + GFF227 0.32 -2.1
254,820 + GFF227 0.32 -0.2
254,820 + GFF227 0.32 -3.2
254,820 + GFF227 0.32 -1.5
254,821 - GFF227 0.32 -0.7
254,821 - GFF227 0.32 -0.6
254,821 - GFF227 0.32 -1.7
254,821 - GFF227 0.32 -2.8
254,821 - GFF227 0.32 -4.7
254,821 - GFF227 0.32 -0.2
254,859 + GFF227 0.35 +0.1
254,859 + GFF227 0.35 +0.3
254,860 - GFF227 0.35 +0.3
254,952 + GFF227 0.44 -2.4
254,952 + GFF227 0.44 -1.7
254,952 + GFF227 0.44 +1.6
254,952 + GFF227 0.44 -1.2
254,952 + GFF227 0.44 +0.1
254,952 + GFF227 0.44 -1.7
254,953 - GFF227 0.44 -0.1
254,953 - GFF227 0.44 -2.5
254,953 - GFF227 0.44 -2.7
254,953 - GFF227 0.44 -1.9
254,953 - GFF227 0.44 -3.7
254,953 - GFF227 0.44 -0.9
254,953 - GFF227 0.44 -3.5
254,975 + GFF227 0.46 -0.6
254,975 + GFF227 0.46 -1.1
254,975 + GFF227 0.46 -0.8
254,975 + GFF227 0.46 -0.7
254,975 + GFF227 0.46 +0.2
254,975 + GFF227 0.46 +0.1
254,975 + GFF227 0.46 +0.7
254,975 + GFF227 0.46 +0.5
254,976 - GFF227 0.46 +0.6
254,976 - GFF227 0.46 -0.3
254,976 - GFF227 0.46 +0.6
254,976 - GFF227 0.46 -2.9
255,021 + GFF227 0.51 -0.5
255,021 + GFF227 0.51 -5.3
255,022 - GFF227 0.51 +0.1
255,108 + GFF227 0.59 +3.2
255,108 + GFF227 0.59 -0.7
255,109 - GFF227 0.59 -1.2
255,109 - GFF227 0.59 +1.6
255,109 - GFF227 0.59 +1.2
255,201 + GFF227 0.68 -1.5
255,201 + GFF227 0.68 -1.4
255,201 + GFF227 0.68 +0.2
255,201 + GFF227 0.68 -0.0
255,201 + GFF227 0.68 -1.5
255,201 + GFF227 0.68 +0.3
255,201 + GFF227 0.68 -1.8
255,201 + GFF227 0.68 -2.3
255,202 - GFF227 0.68 -2.3
255,202 - GFF227 0.68 -0.7
255,202 - GFF227 0.68 -1.6
255,202 - GFF227 0.68 -1.7
255,223 - GFF227 0.70 -1.8
255,237 + GFF227 0.72 -1.7
255,238 - GFF227 0.72 -0.9
255,238 - GFF227 0.72 +1.6
255,238 - GFF227 0.72 -0.4
255,279 + GFF227 0.76 -0.7
255,279 + GFF227 0.76 -1.5
255,279 + GFF227 0.76 -1.8
255,279 + GFF227 0.76 -1.1
255,280 - GFF227 0.76 -1.1
255,280 - GFF227 0.76 -0.4
255,280 - GFF227 0.76 -0.5
255,291 + GFF227 0.77 -1.7
255,336 + GFF227 0.81 -0.4
255,336 + GFF227 0.81 -4.3
255,336 + GFF227 0.81 -0.2
255,337 - GFF227 0.81 -3.9
255,337 - GFF227 0.81 -0.5
255,337 - GFF227 0.81 -2.3
255,337 - GFF227 0.81 +1.0
255,357 + GFF227 0.83 -2.4
255,357 + GFF227 0.83 +0.4
255,357 + GFF227 0.83 -0.9
255,357 + GFF227 0.83 +0.1
255,357 + GFF227 0.83 +0.2
255,358 - GFF227 0.83 -1.7
255,358 - GFF227 0.83 -2.9
255,358 - GFF227 0.83 -2.8
255,358 - GFF227 0.83 -1.0
255,358 - GFF227 0.83 -1.8
255,358 - GFF227 0.83 +0.4
255,358 - GFF227 0.83 -1.2
255,358 - GFF227 0.83 -0.9
255,361 + GFF227 0.83 -1.2
255,361 + GFF227 0.83 -4.8
255,361 + GFF227 0.83 -1.6
255,361 + GFF227 0.83 -1.0
255,361 + GFF227 0.83 -1.4
255,362 - GFF227 0.84 -1.4
255,362 - GFF227 0.84 -2.5
255,362 - GFF227 0.84 +0.2
255,372 + GFF227 0.85 -0.4
255,373 - GFF227 0.85 -0.8
255,373 - GFF227 0.85 -1.2

Or see this region's nucleotide sequence