Strain Fitness in Variovorax sp. SCN45 around GFF2252

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
307,749	+				+1.4
307,824	+		GFF2251	0.23	-1.3
307,962	+		GFF2251	0.51	-1.2
308,051	+		GFF2251	0.69	+1.2
308,160	+				+2.1
308,160	+				-0.7
308,184	+				+0.0
308,184	+				-0.7
308,185	-				-1.3
308,185	-				-0.9
308,185	-				-2.9
308,245	+				-0.6
308,245	+				+0.5
308,245	+				+0.9
308,936	-		GFF2252	0.58	-0.5
309,076	+		GFF2252	0.69	-2.0
309,076	+		GFF2252	0.69	-0.5
309,076	+		GFF2252	0.69	-1.5
309,076	+		GFF2252	0.69	+1.1
309,077	-		GFF2252	0.69	-0.9
309,265	-		GFF2252	0.84	-2.9
309,422	-				+0.6
309,422	-				-0.2
309,422	-				+0.4
309,578	+		GFF2253	0.41	-1.2
309,578	+		GFF2253	0.41	-0.6
309,579	-		GFF2253	0.41	+1.6
309,745	-				-1.8
309,745	-				-0.5
309,747	-				-3.0
309,747	-				+0.4
309,747	-				-2.0
309,747	-				+0.6
309,747	-				-0.7
309,747	-				-0.5
309,780	+				+1.3
309,781	-				-0.4
309,781	-				-0.3
309,788	+				-0.9
309,969	+		GFF2254	0.25	+0.7
309,970	-		GFF2254	0.25	-0.7
309,970	-		GFF2254	0.25	-0.2
309,982	-		GFF2254	0.27	+2.1
310,003	-		GFF2254	0.31	-1.1
310,003	-		GFF2254	0.31	-0.2
310,003	-		GFF2254	0.31	+0.3
310,077	+		GFF2254	0.42	+0.9
310,078	-		GFF2254	0.42	-0.5
310,078	-		GFF2254	0.42	+0.3
310,078	-		GFF2254	0.42	-0.5
310,078	-		GFF2254	0.42	-0.5
310,097	+		GFF2254	0.45	+0.3
310,098	-		GFF2254	0.45	+0.1
310,387	-				-0.9